RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GCSAMLQ5JQS6 135 aa10.51□□□□□ -0.73
CLSTN3-213ENST00000541953 EXOC3-AS1Q8N2X6 119 aa10.51□□□□□ -0.73
CLSTN3-213ENST00000541953 EIF4E3Q8N5X7 224 aaKnown RBP10.51□□□□□ -0.73
CLSTN3-213ENST00000541953 RNF24Q9Y225 148 aa10.51□□□□□ -0.73
CLSTN3-213ENST00000541953 LSM5Q9Y4Y9 91 aaKnown RBP10.51□□□□□ -0.73
CLSTN3-213ENST00000541953 UBE2L5PA0A1B0GUS4 154 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 NAP1L6A6NFF2 107 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 ANXA2RQ3ZCQ2 193 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 TRIQKQ629K1 86 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 ZFAND2AQ8N6M9 145 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 ZNF680Q8NEM1 530 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 LINC00467Q9BRT7 94 aa10.5□□□□□ -0.73
CLSTN3-213ENST00000541953 A0A087WTM6 91 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 IGSF23A1L1A6 192 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 CCDC160A6NGH7 325 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 PAX4O43316 350 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 FHL2Q14192 279 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 GUK1Q16774 197 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 VWC2Q2TAL6 325 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 LYPD5Q6UWN5 251 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 ST6GAL2Q96JF0 529 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 C8orf49Q96NF6 230 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 VGLL1Q99990 258 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 SLC39A9Q9NUM3 307 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 ICOSQ9Y6W8 199 aa10.49□□□□□ -0.73
CLSTN3-213ENST00000541953 L7N2F9 121 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 ZNF253O75346 499 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 SMR3BP02814 79 aaPredicted RBP10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 BCAP31P51572 246 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 CAV2P51636 162 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 CRYBA4P53673 196 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 ERVFC1-1P60608 527 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 VAMP2P63027 116 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 SPANXN2Q5MJ10 180 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 Q6ZRG5 221 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 WFDC10BQ8IUB3 73 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 OR1L4Q8NGR5 311 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 Q8TAT8 98 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 BLNKQ8WV28 456 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 MRPL53Q96EL3 112 aaKnown RBP10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 SEC22CQ9BRL7 303 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 C20orf85Q9H1P6 137 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 UQCC1Q9NVA1 299 aa10.48□□□□□ -0.73
CLSTN3-213ENST00000541953 FAM25EA8MYX2 175 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 PLA2G10O15496 165 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 PRAF2O60831 178 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 MPDU1O75352 247 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 CRISP2P16562 243 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 INPP1P49441 399 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 BAXQ07812 192 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 SLC25A2Q9BXI2 301 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 PGPEP1Q9NXJ5 209 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 TMEM14CQ9P0S9 112 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 MDFICQ9P1T7 246 aa10.47□□□□□ -0.73
CLSTN3-213ENST00000541953 SFTA3P0C7M3 94 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 IL7P13232 177 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 RPL29P47914 159 aaKnown RBP10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 ICAM4Q14773 271 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 FAM122CQ6P4D5 195 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 C9orf47Q6ZRZ4 202 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 FAM167A-AS1Q96KT0 104 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 PFDN5Q99471 154 aa10.46□□□□□ -0.73
CLSTN3-213ENST00000541953 TRAV6A0A075B6T7 132 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 IGHV1OR15-1A0A075B7D0 117 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 GPX1P07203 203 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 HIST1H1EP10412 219 aaKnown RBP10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 FGF7P21781 194 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 IBA57Q5T440 356 aaKnown RBP10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 CDPF1Q6NVV7 123 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 LINC00477Q96M19 166 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 PRO0255Q9UI72 69 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 HHLA3Q9XRX5 114 aa10.45□□□□□ -0.74
CLSTN3-213ENST00000541953 E5RGE8 158 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 IL15RAQ13261 267 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 RAB31Q13636 194 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 MUC21Q5SSG8 566 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 MIR17HGQ75NE6 70 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 TMEM252Q8N6L7 170 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 ZNF479Q96JC4 524 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 LYRM2Q9NU23 88 aaPredicted RBP10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 ZNF492Q9P255 531 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 TIMM9Q9Y5J7 89 aa10.44□□□□□ -0.74
CLSTN3-213ENST00000541953 K7EQD1 137 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 RGS13O14921 159 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 SULT1A1P50225 295 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 S100A10P60903 97 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 RAB32Q13637 225 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 PDE6HQ13956 83 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 ZNF846Q147U1 533 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 PHYHIPLQ96FC7 376 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 NPCDR1Q9BY65 106 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 PRELID1Q9Y255 219 aa10.43□□□□□ -0.74
CLSTN3-213ENST00000541953 LOC100131303A0A0U1RQF7 123 aa10.42□□□□□ -0.74
CLSTN3-213ENST00000541953 C5orf51A6NDU8 294 aa10.42□□□□□ -0.74
CLSTN3-213ENST00000541953 EREGO14944 169 aa10.42□□□□□ -0.74
CLSTN3-213ENST00000541953 CHAC2Q8WUX2 184 aa10.42□□□□□ -0.74
CLSTN3-213ENST00000541953 LY96Q9Y6Y9 160 aa10.42□□□□□ -0.74
CLSTN3-213ENST00000541953 LRP1Q07954 4544 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 OR10J4P0C629 311 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 MRPL23Q16540 153 aaKnown RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms