RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FNDC10F2Z333 226 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 FSTP19883 344 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 IL17DQ8TAD2 202 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 BAALCQ8WXS3 180 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 DDB2Q92466 427 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 TMEM191AQ9H0A3 160 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 RNASE7Q9H1E1 156 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 GNB4Q9HAV0 340 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 TPSG1Q9NRR2 321 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 TMEM14DPA8MWL7 114 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 RNASE1P07998 156 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 SMIM13P0DJ93 91 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 RND2P52198 227 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 PSG5Q15238 335 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 OR10J3Q5JRS4 329 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 ACSM6Q6P461 480 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 KLHL30-AS1Q8NEE0 82 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 DSCAML1Q8TD84 2053 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 BCL2P10415 239 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 XGP55808 180 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 DLX6P56179 175 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 KRTAP10-3P60369 221 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 RPL8P62917 257 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 Q6ZPA2 131 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 OR5C1Q8NGR4 320 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 C18orf15Q96N68 181 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 CCL28Q9NRJ3 127 aa6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 NHP2Q9NX24 153 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-219ENST00000514096 TRAV8-2A0A0B4J237 113 aa6.21□□□□□ -1.41
LIMCH1-219ENST00000514096 A0A1W2PPM0 123 aa6.21□□□□□ -1.41
LIMCH1-219ENST00000514096 FCGR2BP31994 310 aaPredicted RBP6.21□□□□□ -1.41
LIMCH1-219ENST00000514096 RPL23P62829 140 aaKnown RBP6.21□□□□□ -1.41
LIMCH1-219ENST00000514096 Q6ZUT4 128 aa6.21□□□□□ -1.41
LIMCH1-219ENST00000514096 AMMECR1Q9Y4X0 333 aaPredicted RBP6.21□□□□□ -1.41
LIMCH1-219ENST00000514096 CSN3P07498 182 aa6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM136Q6ZRR5 245 aa6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 TRAV1-2A0A0B4J238 106 aa6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 IGKV1-6A0A0C4DH72 117 aa6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 C1orf100Q5SVJ3 147 aa6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 PIFOQ8TCI5 191 aa6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 LIN7CQ9NUP9 197 aaKnown RBP6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 KLK5Q9Y337 293 aaPredicted RBP6.21□□□□□ -1.42
LIMCH1-219ENST00000514096 IGKV1D-13A0A0B4J2D9 117 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 C15orf65H3BRN8 121 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 K7ERJ3 54 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 SSSCA1O60232 199 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 ZNF324O75467 553 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 IGKV1-13P0DP09 117 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 VAX1Q5SQQ9 334 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 TREML4Q6UXN2 200 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 SPATA12Q7Z6I5 190 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 SCGB3A2Q96PL1 93 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 KLK15Q9H2R5 256 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 J3KT08 172 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 DEDDO75618 318 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 NDUFV3P56181 108 aaKnown RBP6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 LOXL3P58215 753 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM229BQ8NBD8 167 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 SMDT1Q9H4I9 107 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 TET2Q6N021 2002 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM236DA0A1B0GTK5 79 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM262E9PQX1 116 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 IGLV1-47P01700 117 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM236CP0DP71 79 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 CAMPP49913 170 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 ZNF114Q8NC26 417 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 OR4X2Q8NGF9 303 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 SLC25A22Q9H936 323 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 KCNIP2Q9NS61 270 aa6.2□□□□□ -1.42
LIMCH1-219ENST00000514096 CTRLP40313 264 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 SEC11AP67812 179 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 KIR2DS1Q14954 304 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 IBA57Q5T440 356 aaKnown RBP6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 IGHV3OR16-13A0A075B7E8 117 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 IGHV3-74A0A0B4J1X5 117 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 A0A1W2PPI3 338 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 ATP6V0E1O15342 81 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 MOSP00540 346 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 FSHBP01225 129 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM90A2PQ658T7 463 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 OR4F17Q8NGA8 305 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 OR11H6Q8NGC7 330 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 IL36GQ9NZH8 169 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 ZNF256Q9Y2P7 627 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM236AA0A1B0GUQ0 79 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM236BA0A1B0GV22 79 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 DEFA4P12838 97 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 TAS2R45P59539 299 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 C4orf26Q17RF5 130 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 VGLL1Q99990 258 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 PXMP4Q9Y6I8 212 aa6.19□□□□□ -1.42
LIMCH1-219ENST00000514096 A0A087WX48 190 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 SCGB1C2P0DMR2 95 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 POU2AF1Q16633 256 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 RBPMS2Q6ZRY4 209 aaKnown RBP6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 ZNF695Q8IW36 515 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 OR10G8Q8NGN5 311 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM70Q9BUB7 260 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 MOB4Q9Y3A3 225 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 IGHV3-49A0A0A0MS15 119 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms