RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SMLR1H3BR10 107 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 JTBO76095 146 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 OR10J4P0C629 311 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 RPL7L1Q6DKI1 246 aaKnown RBP10.89□□□□□ -0.67
UPF1-202ENST00000594243 Q8NAQ8 132 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 FXYD5Q96DB9 178 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 IGF2BP2-AS1Q96M15 143 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 NEU1Q99519 415 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 AGRNO00468 2067 aa10.89□□□□□ -0.67
UPF1-202ENST00000594243 IGHV3OR16-12A0A075B7B8 117 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 IGHV4-28A0A0C4DH34 117 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 HMSDA8MTL9 139 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 BOLA2-SMG1P6H3BVE0 249 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 RAB2AP61019 212 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 SPINK13Q1W4C9 94 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 FAM122CQ6P4D5 195 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 PQLC2Q6ZP29 291 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 LYPD1Q8N2G4 141 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 EXOC3-AS1Q8N2X6 119 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 DNAH7Q8WXX0 4024 aa10.88□□□□□ -0.67
UPF1-202ENST00000594243 PRAC2D3DTV9 90 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 M0R2Z0 102 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 DEFB4AO15263 64 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 CDKN1BP46527 198 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 UBE2L3P68036 154 aaKnown RBP10.87□□□□□ -0.67
UPF1-202ENST00000594243 ZNF345Q14585 488 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 ICAM4Q14773 271 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 Q6ZNX1 250 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 C11orf45Q8TAV5 145 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 ZNF503Q96F45 646 aa10.87□□□□□ -0.67
UPF1-202ENST00000594243 M0R3E3 92 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 CRXO43186 299 aaPredicted RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 INSP01308 110 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 RBMY1A1P0DJD3 496 aaKnown RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 RBMY1CP0DJD4 496 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 PRB4P10163 310 aaPredicted RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 TSPOP30536 169 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 CDC34P49427 236 aaPredicted RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 RANP62826 216 aaKnown RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 RBMY1FQ15415 496 aaKnown RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 C1orf158Q8N1D5 194 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 RPP25LQ8N5L8 163 aaKnown RBP10.86□□□□□ -0.67
UPF1-202ENST00000594243 TMEM208Q9BTX3 173 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 SH3BGRL3Q9H299 93 aa10.86□□□□□ -0.67
UPF1-202ENST00000594243 A0A0D9SG52 128 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 TMEM189A5PLL7 270 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 CXorf65A6NEN9 183 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 NPIPB6E9PJ23 425 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 HBE1P02100 147 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 CSN1S1P47710 185 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 KCNRGQ8N5I3 272 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 LINC00477Q96M19 166 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 ARPC5LQ9BPX5 153 aa10.85□□□□□ -0.67
UPF1-202ENST00000594243 ACTR3CQ9C0K3 210 aaPredicted RBP10.85□□□□□ -0.67
UPF1-202ENST00000594243 TRAV12-2A0A075B6T6 113 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 STAG3L2P0CL84 134 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 STAG3L3P0CL85 134 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 PMS2P11Q13670 270 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 FAM74A1Q5RGS3 127 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 TMEM256Q8N2U0 113 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 OR11H4Q8NGC9 324 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 RAB24Q969Q5 203 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 PHYHIPLQ96FC7 376 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 ODF3Q96PU9 254 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 Q9H3A6 140 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 CYTL1Q9NRR1 136 aa10.84□□□□□ -0.67
UPF1-202ENST00000594243 DYNC2H1Q8NCM8 4307 aaKnown RBP10.83□□□□□ -0.68
UPF1-202ENST00000594243 NUPR2A6NF83 97 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 HMGB3O15347 200 aaKnown RBP10.83□□□□□ -0.68
UPF1-202ENST00000594243 EIF3GO75821 320 aaKnown RBP eCLIP10.83□□□□□ -0.68
UPF1-202ENST00000594243 CT45A10P0DMU9 189 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 LEPP41159 167 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 RRN3P1Q2M238 152 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 BAP18Q8IXM2 172 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 RXFP4Q8TDU9 374 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 C20orf144Q9BQM9 153 aa10.83□□□□□ -0.68
UPF1-202ENST00000594243 KANTRA0A1W2PQU2 76 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 CXorf1O96002 111 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 NANOS2P60321 138 aaKnown RBP10.82□□□□□ -0.68
UPF1-202ENST00000594243 AKR1C8PQ5T2L2 129 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 TMEM78Q5T7P6 136 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 C9orf47Q6ZRZ4 202 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 ST6GAL2Q96JF0 529 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 LINC01587Q99440 93 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 AGPAT4-IT1Q9H0P7 198 aa10.82□□□□□ -0.68
UPF1-202ENST00000594243 RBAKDNA6NC62 111 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 PGPA6NDG6 321 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 SPART-AS1P0CW21 52 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 ARL14EPLP0DKL9 152 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 ERCC8Q13216 396 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 CEMP1Q6PRD7 247 aaPredicted RBP10.81□□□□□ -0.68
UPF1-202ENST00000594243 TCTE3Q8IZS6 198 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 ARL6IP6Q8N6S5 226 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 CMTM2Q8TAZ6 248 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 PHLDA1Q8WV24 401 aaPredicted RBP10.81□□□□□ -0.68
UPF1-202ENST00000594243 OTORQ9NRC9 128 aa10.81□□□□□ -0.68
UPF1-202ENST00000594243 KLK5Q9Y337 293 aaPredicted RBP10.81□□□□□ -0.68
UPF1-202ENST00000594243 LOC102723971A0A1B0GUV8 181 aa10.8□□□□□ -0.68
UPF1-202ENST00000594243 C11orf94C9JXX5 98 aa10.8□□□□□ -0.68
UPF1-202ENST00000594243 H7BYZ3 331 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 326.9 ms