RNA–Protein interactions for RNA: ENST00000580170.5

PTPRM-211, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRM, Length 5,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-211ENST00000580170 ERCC8Q13216 396 aa17.32■□□□□ 0.36
PTPRM-211ENST00000580170 LINC00479Q96M42 142 aa17.32■□□□□ 0.36
PTPRM-211ENST00000580170 HS3ST6Q96QI5 342 aa17.32■□□□□ 0.36
PTPRM-211ENST00000580170 C9JQL5 133 aa17.32■□□□□ 0.36
PTPRM-211ENST00000580170 K7EP13 123 aa17.32■□□□□ 0.36
PTPRM-211ENST00000580170 A0A1B0GUS0 222 aa17.31■□□□□ 0.36
PTPRM-211ENST00000580170 MBD3L4A6NDZ8 208 aaPredicted RBP17.31■□□□□ 0.36
PTPRM-211ENST00000580170 MBD3L3A6NE82 208 aaPredicted RBP17.31■□□□□ 0.36
PTPRM-211ENST00000580170 MBD3L5A6NJ08 208 aaPredicted RBP17.31■□□□□ 0.36
PTPRM-211ENST00000580170 VWC2LB2RUY7 222 aa17.31■□□□□ 0.36
PTPRM-211ENST00000580170 MBD3L2Q8NHZ7 208 aaPredicted RBP17.31■□□□□ 0.36
PTPRM-211ENST00000580170 VGLL1Q99990 258 aa17.31■□□□□ 0.36
PTPRM-211ENST00000580170 COL8A2P25067 703 aa17.31■□□□□ 0.36
PTPRM-211ENST00000580170 IGHV3-53P01767 116 aa17.31■□□□□ 0.36
PTPRM-211ENST00000580170 SIP14410 1827 aa17.31■□□□□ 0.36
PTPRM-211ENST00000580170 RPL36AP83881 106 aaKnown RBP17.3■□□□□ 0.36
PTPRM-211ENST00000580170 RPL36ALQ969Q0 106 aaKnown RBP17.3■□□□□ 0.36
PTPRM-211ENST00000580170 OVOL2Q9BRP0 275 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 PAX4O43316 350 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 IGLC2P0DOY2 106 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 IGLC3P0DOY3 106 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 RASL10AQ92737 203 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 GFRA4Q9GZZ7 299 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 FAM186AA6NE01 2351 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 ZNF625Q96I27 306 aaPredicted RBP17.3■□□□□ 0.36
PTPRM-211ENST00000580170 FAM223BA6NKX1 122 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 H3BMM0 161 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 FAM223AQ8IWN6 122 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 UBE2WQ96B02 151 aa17.3■□□□□ 0.36
PTPRM-211ENST00000580170 CMC4P56277 68 aaPredicted RBP17.29■□□□□ 0.36
PTPRM-211ENST00000580170 IGKV1-6A0A0C4DH72 117 aa17.29■□□□□ 0.36
PTPRM-211ENST00000580170 PPDPFLQ8WWR9 84 aa17.29■□□□□ 0.36
PTPRM-211ENST00000580170 AHCTF1Q8WYP5 2266 aa17.29■□□□□ 0.36
PTPRM-211ENST00000580170 SHANK2-AS3Q9BTD1 123 aa17.29■□□□□ 0.36
PTPRM-211ENST00000580170 JPT2Q9H910 190 aa17.29■□□□□ 0.36
PTPRM-211ENST00000580170 K7EP34 96 aa17.28■□□□□ 0.36
PTPRM-211ENST00000580170 CFPP27918 469 aa17.28■□□□□ 0.36
PTPRM-211ENST00000580170 TP53BP1Q12888 1972 aaPredicted RBP17.28■□□□□ 0.36
PTPRM-211ENST00000580170 A0A087WWL8 130 aa17.28■□□□□ 0.36
PTPRM-211ENST00000580170 USMG5Q96IX5 58 aa17.28■□□□□ 0.36
PTPRM-211ENST00000580170 IFITM1P13164 125 aa17.27■□□□□ 0.36
PTPRM-211ENST00000580170 ETDBQ3ZM63 59 aa17.27■□□□□ 0.36
PTPRM-211ENST00000580170 LTBP1Q14766 1721 aa17.27■□□□□ 0.36
PTPRM-211ENST00000580170 ZNRD1Q9P1U0 126 aa17.27■□□□□ 0.36
PTPRM-211ENST00000580170 F8W1H4 67 aa17.27■□□□□ 0.36
PTPRM-211ENST00000580170 A0A087WX48 190 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 IGHG3P01860 377 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 PIP4P2Q8N4L2 257 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 MPDZO75970 2070 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 RPL35AP18077 110 aaKnown RBP17.26■□□□□ 0.35
PTPRM-211ENST00000580170 RHPN1-AS1Q9BWJ2 59 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 B4DSR2 109 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 IGHV2-5P01817 119 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 A0A1W2PPI3 338 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 GAGE12HA6NDE8 117 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 PFN1P07737 140 aaKnown RBP17.26■□□□□ 0.35
PTPRM-211ENST00000580170 ARMS2P0C7Q2 107 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 DNAJC30Q96LL9 226 aa17.26■□□□□ 0.35
PTPRM-211ENST00000580170 SLAQ13239 276 aa17.25■□□□□ 0.35
PTPRM-211ENST00000580170 ESPL1Q14674 2120 aa17.25■□□□□ 0.35
PTPRM-211ENST00000580170 ARHGEF17Q96PE2 2063 aaPredicted RBP17.24■□□□□ 0.35
PTPRM-211ENST00000580170 LY6HO94772 140 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 TMEM75Q8N9X5 138 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 C18orf32Q8TCD1 76 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 SRSF8Q9BRL6 282 aaKnown RBP17.24■□□□□ 0.35
PTPRM-211ENST00000580170 AZU1P20160 251 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 GNLYP22749 145 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 Q6ZWC4 215 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 TRBV20-1A0A075B6N2 111 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 C8orf49Q96NF6 230 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 ZSWIM8A7E2V4 1837 aa17.24■□□□□ 0.35
PTPRM-211ENST00000580170 C1orf159Q96HA4 380 aa17.23■□□□□ 0.35
PTPRM-211ENST00000580170 LEPROTO15243 131 aa17.23■□□□□ 0.35
PTPRM-211ENST00000580170 TIMM21Q9BVV7 248 aa17.23■□□□□ 0.35
PTPRM-211ENST00000580170 INSP01308 110 aa17.23■□□□□ 0.35
PTPRM-211ENST00000580170 SPXQ9BT56 116 aa17.23■□□□□ 0.35
PTPRM-211ENST00000580170 DTX1Q86Y01 620 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 UBE2E2Q96LR5 201 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 LIME1Q9H400 295 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 TMEM213A2RRL7 107 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 APC2O95996 2303 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 PDE6HQ13956 83 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 MRAPQ8TCY5 172 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 ZNF492Q9P255 531 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 MYMXA0A1B0GTQ4 84 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 SAA4P35542 130 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 TMEM14BQ9NUH8 114 aa17.22■□□□□ 0.35
PTPRM-211ENST00000580170 TCF15Q12870 199 aa17.21■□□□□ 0.35
PTPRM-211ENST00000580170 IL17RELQ6ZVW7 336 aa17.21■□□□□ 0.35
PTPRM-211ENST00000580170 THADAQ6YHU6 1953 aa17.21■□□□□ 0.35
PTPRM-211ENST00000580170 CYYR1Q96J86 154 aa17.21■□□□□ 0.35
PTPRM-211ENST00000580170 ANAPC10Q9UM13 185 aa17.21■□□□□ 0.35
PTPRM-211ENST00000580170 SDK2Q58EX2 2172 aa17.21■□□□□ 0.35
PTPRM-211ENST00000580170 TRAV13-1A0A0B4J241 112 aa17.2■□□□□ 0.34
PTPRM-211ENST00000580170 E7EQL1 145 aa17.2■□□□□ 0.34
PTPRM-211ENST00000580170 TRACP01848 142 aa17.2■□□□□ 0.34
PTPRM-211ENST00000580170 PLXNA3P51805 1871 aa17.2■□□□□ 0.34
PTPRM-211ENST00000580170 CFHR2P36980 270 aa17.2■□□□□ 0.34
PTPRM-211ENST00000580170 PAX9P55771 341 aa17.2■□□□□ 0.34
PTPRM-211ENST00000580170 KLHL30-AS1Q8NEE0 82 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms