RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CHAC2Q8WUX2 184 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 SAT2Q96F10 170 aaPredicted RBP7.62□□□□□ -1.19
CD44-227ENST00000528086 GPR82Q96P67 336 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 MGAT4CQ9UBM8 478 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 M0R2Z0 102 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 RPL7P18124 248 aaKnown RBP7.61□□□□□ -1.19
CD44-227ENST00000528086 CAMLGP49069 296 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 BCAP31P51572 246 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 RAP2BP61225 183 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 ZNF546Q86UE3 836 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 RPP25LQ8N5L8 163 aaKnown RBP7.61□□□□□ -1.19
CD44-227ENST00000528086 ZNF331Q9NQX6 463 aaPredicted RBP7.61□□□□□ -1.19
CD44-227ENST00000528086 RPRMQ9NS64 109 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 UQCC1Q9NVA1 299 aa7.61□□□□□ -1.19
CD44-227ENST00000528086 UBE2L5PA0A1B0GUS4 154 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 PLAC8L1A1L4L8 177 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 LY6G6CO95867 125 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 FGL1Q08830 312 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 PSG3Q16557 428 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 SPINK13Q1W4C9 94 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 PXDC1Q5TGL8 231 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 SPATA31B1PQ5VZV4 182 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 C1QTNF4Q9BXJ3 329 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 NMES1Q9C002 83 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 MFFQ9GZY8 342 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 DNAJC4Q9NNZ3 241 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 RFNGQ9Y644 331 aa7.6□□□□□ -1.19
CD44-227ENST00000528086 IGHV3OR16-12A0A075B7B8 117 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 S100A11P31949 105 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 RPL29P47914 159 aaKnown RBP7.59□□□□□ -1.19
CD44-227ENST00000528086 NUTF2P61970 127 aaKnown RBP7.59□□□□□ -1.19
CD44-227ENST00000528086 C10orf113Q5VZT2 155 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 EBLN2Q6P2I7 272 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 BAP18Q8IXM2 172 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 OR8A1Q8NGG7 326 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 FAM167A-AS1Q96KT0 104 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 IGF2BP2-AS1Q96M15 143 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 PARD6GQ9BYG4 376 aaPredicted RBP7.59□□□□□ -1.19
CD44-227ENST00000528086 SLC39A9Q9NUM3 307 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 ZNF586Q9NXT0 402 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 DKK2Q9UBU2 259 aa7.59□□□□□ -1.19
CD44-227ENST00000528086 KLK5Q9Y337 293 aaPredicted RBP7.59□□□□□ -1.19
CD44-227ENST00000528086 TRAV12-2A0A075B6T6 113 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 COX7A2P2O60397 106 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 PRAF2O60831 178 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 NDUFB4O95168 129 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 AZU1P20160 251 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 FGF7P21781 194 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 LRRC37A5PQ49AS3 106 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 SAMD13Q5VXD3 122 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 LGALS9CQ6DKI2 356 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 ZNF738Q8NE65 137 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 THAP6Q8TBB0 222 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 C2CD4CQ8TF44 421 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 PPP1R1CQ8WVI7 109 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 WFDC1Q9HC57 220 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 GPN1Q9HCN4 374 aaPredicted RBP7.58□□□□□ -1.2
CD44-227ENST00000528086 BATF3Q9NR55 127 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 PXMP4Q9Y6I8 212 aa7.58□□□□□ -1.2
CD44-227ENST00000528086 SMIM9A6NGZ8 99 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 ZNF705GA8MUZ8 300 aaPredicted RBP7.57□□□□□ -1.2
CD44-227ENST00000528086 IGLL5B9A064 214 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 MPC2O95563 127 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 PVALBP20472 110 aaPredicted RBP7.57□□□□□ -1.2
CD44-227ENST00000528086 EMP1P54849 157 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 B2MP61769 119 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 OR5C1Q8NGR4 320 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 RPUSD4Q96CM3 377 aaKnown RBP7.57□□□□□ -1.2
CD44-227ENST00000528086 NPCDR1Q9BY65 106 aa7.57□□□□□ -1.2
CD44-227ENST00000528086 NACAE9PAV3 2078 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 IGHV4-4A0A075B6R2 117 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 TRAV10A0A0B4J240 114 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 E5RGE8 158 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 BOLA2-SMG1P6H3BVE0 249 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 M0R3E3 92 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 DUSP14O95147 198 aaKnown RBP7.56□□□□□ -1.2
CD44-227ENST00000528086 PYYP10082 97 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 CXCL2P19875 107 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 HIST1H1AQ02539 215 aaPredicted RBP7.56□□□□□ -1.2
CD44-227ENST00000528086 BAXQ07812 192 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 CLINT1Q14677 625 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 ATP6V1FQ16864 119 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 FAM222AQ5U5X8 452 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 LCN15Q6UWW0 184 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 MIR17HGQ75NE6 70 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 STX12Q86Y82 276 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 BPIFA4PQ86YQ2 179 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 ZNF503Q96F45 646 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 SLC25A2Q9BXI2 301 aa7.56□□□□□ -1.2
CD44-227ENST00000528086 YTHDF2Q9Y5A9 579 aaKnown RBP7.56□□□□□ -1.2
CD44-227ENST00000528086 DEFB131BA0A096LNP1 70 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 LOC102723971A0A1B0GUV8 181 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 C11orf94C9JXX5 98 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 CT45A10P0DMU9 189 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 HBG1P69891 147 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 HBG2P69892 147 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 FCN2Q15485 313 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 Q5BKY6 102 aa7.55□□□□□ -1.2
CD44-227ENST00000528086 WDR61Q9GZS3 305 aaKnown RBP7.55□□□□□ -1.2
CD44-227ENST00000528086 TMEM14CQ9P0S9 112 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms