RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 NEU1Q99519 415 aa10.89□□□□□ -0.67
USP39-217ENST00000491659 WDR83OSQ9Y284 106 aa10.89□□□□□ -0.67
USP39-217ENST00000491659 TMEM189A5PLL7 270 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 SMIM9A6NGZ8 99 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 RLN2P04090 185 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 CXCL2P19875 107 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 CNN1P51911 297 aaKnown RBP10.88□□□□□ -0.67
USP39-217ENST00000491659 ATP6V1FQ16864 119 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 MIC13Q5XKP0 118 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 LCN15Q6UWW0 184 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 OR1L4Q8NGR5 311 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 PFDN5Q99471 154 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 NMES1Q9C002 83 aa10.88□□□□□ -0.67
USP39-217ENST00000491659 PLECQ15149 4684 aaKnown RBP10.87□□□□□ -0.67
USP39-217ENST00000491659 TRAV10A0A0B4J240 114 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 A8MTW9 85 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 SIX6O95475 246 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 AMBPP02760 352 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 CXCL3P19876 107 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 FGF7P21781 194 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 TCTAP57738 103 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 LRRC37A5PQ49AS3 106 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 Q6ZTC4 211 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 TMEM37Q8WXS4 190 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 SLC50A1Q9BRV3 221 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 CELA1Q9UNI1 258 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 RFNGQ9Y644 331 aa10.87□□□□□ -0.67
USP39-217ENST00000491659 E5RGE8 158 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 MRPS12O15235 138 aaKnown RBP10.86□□□□□ -0.67
USP39-217ENST00000491659 HBE1P02100 147 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 B2MP61769 119 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 PRR20EP86478 221 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 PRR20CP86479 221 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 PRR20DP86480 221 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 PRR20BP86481 221 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 PRR20AP86496 221 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 CYCSP99999 105 aaKnown RBP10.86□□□□□ -0.67
USP39-217ENST00000491659 HIST1H1AQ02539 215 aaPredicted RBP10.86□□□□□ -0.67
USP39-217ENST00000491659 OPCMLQ14982 345 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 PSG3Q16557 428 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 AMTNQ6UX39 209 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 OR11H7Q8NGC8 314 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 IGF2BP2-AS1Q96M15 143 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 TMEM208Q9BTX3 173 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 SLC25A31Q9H0C2 315 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 DNAJC4Q9NNZ3 241 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 ALG5Q9Y673 324 aa10.86□□□□□ -0.67
USP39-217ENST00000491659 IGLL5B9A064 214 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 BOLA2-SMG1P6H3BVE0 249 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 SSNA1O43805 119 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 MPDU1O75352 247 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 INSP01308 110 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 RPL29P47914 159 aaKnown RBP10.85□□□□□ -0.67
USP39-217ENST00000491659 EMP1P54849 157 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 SPINK13Q1W4C9 94 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 LGALS9CQ6DKI2 356 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 SLC39A9Q9NUM3 307 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 PPP1R14DQ9NXH3 145 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 PXMP4Q9Y6I8 212 aa10.85□□□□□ -0.67
USP39-217ENST00000491659 TEX48A0A1B0GUV7 120 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 M0R2Z0 102 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 SPART-AS1P0CW21 52 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 RHOBP62745 196 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 RRN3P1Q2M238 152 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 MORN5Q5VZ52 161 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 ZNF767PQ75MW2 155 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 C1orf158Q8N1D5 194 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 OR8A1Q8NGG7 326 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 OR5C1Q8NGR4 320 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 RPUSD4Q96CM3 377 aaKnown RBP10.84□□□□□ -0.67
USP39-217ENST00000491659 MED28Q9H204 178 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 ZNF331Q9NQX6 463 aaPredicted RBP10.84□□□□□ -0.67
USP39-217ENST00000491659 OR5AC2Q9NZP5 309 aa10.84□□□□□ -0.67
USP39-217ENST00000491659 LOC102723971A0A1B0GUV8 181 aa10.83□□□□□ -0.68
USP39-217ENST00000491659 SNRPCP09234 159 aaKnown RBP10.83□□□□□ -0.68
USP39-217ENST00000491659 PET100P0DJ07 73 aa10.83□□□□□ -0.68
USP39-217ENST00000491659 C12orf74Q32Q52 190 aa10.83□□□□□ -0.68
USP39-217ENST00000491659 NPCDR1Q9BY65 106 aa10.83□□□□□ -0.68
USP39-217ENST00000491659 DEFB131BA0A096LNP1 70 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 H3BTX0 84 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 IGLC2P0DOY2 106 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 NHLH2Q02577 135 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 GUK1Q16774 197 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 PPP1R1CQ8WVI7 109 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 KCNIP2Q9NS61 270 aa10.82□□□□□ -0.68
USP39-217ENST00000491659 IGHV4-4A0A075B6R2 117 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 TRAV5A0A0B4J249 113 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 SLC17A3O00476 420 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 H2BFSP57053 126 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 CLINT1Q14677 625 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 BAP18Q8IXM2 172 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 THAP6Q8TBB0 222 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 RNF126Q9BV68 326 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 APLNQ9ULZ1 77 aa10.81□□□□□ -0.68
USP39-217ENST00000491659 TRAV12-2A0A075B6T6 113 aa10.8□□□□□ -0.68
USP39-217ENST00000491659 H0YIZ8 118 aa10.8□□□□□ -0.68
USP39-217ENST00000491659 H3BQ15 152 aa10.8□□□□□ -0.68
USP39-217ENST00000491659 CRXO43186 299 aaPredicted RBP10.8□□□□□ -0.68
USP39-217ENST00000491659 ZFP69Q49AA0 526 aa10.8□□□□□ -0.68
USP39-217ENST00000491659 FAM222AQ5U5X8 452 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms