RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TEX45Q8NA69 505 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 C5orf17Q8NAS9 161 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 C8orf46Q8TAG6 207 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 SRSF12Q8WXF0 261 aaKnown RBP5.96□□□□□ -1.46
LIMA1-213ENST00000552720 OR8B2Q96RD0 313 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 PRSS22Q9GZN4 317 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 UQCR10Q9UDW1 63 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 GOLT1BQ9Y3E0 138 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 F11RQ9Y624 299 aaKnown RBP5.96□□□□□ -1.46
LIMA1-213ENST00000552720 ZNF785A8K8V0 405 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 BUB1B-PAK6H3BSN5 160 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 NDUFB8O95169 186 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 P01737 135 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 IGLC1P0CG04 106 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 IGLL1P15814 213 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 HNRNPA3P51991 378 aaKnown RBP5.95□□□□□ -1.46
LIMA1-213ENST00000552720 HBBP68871 147 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 FAM120AOSQ5T036 256 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 GOLT1AQ6ZVE7 132 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 PRNTQ86SH4 94 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 BCL6BQ8N143 479 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-213ENST00000552720 STXBP6Q8NFX7 210 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 OR8B3Q8NGG8 313 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 LINC01560Q8TB33 94 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 C22orf15Q8WYQ4 148 aa5.95□□□□□ -1.46
LIMA1-213ENST00000552720 MCRIP2Q9BUT9 160 aaKnown RBP5.95□□□□□ -1.46
LIMA1-213ENST00000552720 SPTBN1Q01082 2364 aaKnown RBP5.95□□□□□ -1.46
LIMA1-213ENST00000552720 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-213ENST00000552720 IGLV2-11P01706 119 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 HINT1P49773 126 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-213ENST00000552720 TCF15Q12870 199 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 KLF17Q5JT82 389 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-213ENST00000552720 Q86TA4 180 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 MRPL52Q86TS9 123 aaKnown RBP5.94□□□□□ -1.46
LIMA1-213ENST00000552720 FMC1Q96HJ9 113 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 SLC25A39Q9BZJ4 359 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-213ENST00000552720 RALYQ9UKM9 306 aaKnown RBP5.94□□□□□ -1.46
LIMA1-213ENST00000552720 HIGD1AQ9Y241 93 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 LAMTOR2Q9Y2Q5 125 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 IGHV1-24A0A0C4DH33 117 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 A8MWL6 223 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 I3L2K1 104 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 OVOL3O00110 214 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 CA7P43166 264 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 COL5A1-AS1Q5SY13 56 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 ATP5L2Q7Z4Y8 100 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 CHRDL1Q9BU40 450 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 COL6A6A6NMZ7 2263 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 AKAP6Q13023 2319 aa5.94□□□□□ -1.46
LIMA1-213ENST00000552720 A0A1W2PRD5 423 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 A0A1W2PRF3 423 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 A0A1W2PRM7 423 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 IGKV1-17P01599 117 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 COL8A1P27658 744 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 TSPOP30536 169 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 PLP1P60201 277 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 PLGLAQ15195 96 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 RPEQ96AT9 228 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 DAZAP1Q96EP5 407 aaKnown RBP5.93□□□□□ -1.46
LIMA1-213ENST00000552720 TIMM8BQ9Y5J9 83 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-213ENST00000552720 PPIAL4CA0A0B4J2A2 164 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 M0R3E3 92 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 SIAH2O43255 324 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 CSN3P07498 182 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 PPIAL4GP0DN37 164 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 APOBEC3AP31941 199 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-213ENST00000552720 ZC2HC1AQ96GY0 325 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 RBM14Q96PK6 669 aaKnown RBP5.93□□□□□ -1.46
LIMA1-213ENST00000552720 RASL11BQ9BPW5 248 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 ONECUT1Q9UBC0 465 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 HILPDAQ9Y5L2 63 aa5.93□□□□□ -1.46
LIMA1-213ENST00000552720 TRAV9-2A0A087WT02 112 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 hDV102S1A0JD36 115 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 H0Y8G0 127 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 K7EIM0 57 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 TIMM23O14925 209 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 CNIH1O95406 144 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 APOHP02749 345 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-213ENST00000552720 KLRD1Q13241 179 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 CFAP161Q6P656 301 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 UNQ5815/PRO19632Q6UWF5 114 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 RBPMS2Q6ZRY4 209 aaKnown RBP5.92□□□□□ -1.46
LIMA1-213ENST00000552720 ZNF492Q9P255 531 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 LOC102724200A0A096LPH7 203 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-213ENST00000552720 OR4C46A6NHA9 309 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 CD3EP07766 207 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 ARMS2P0C7Q2 107 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 GAGE1Q13065 139 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 OR4F17Q8NGA8 305 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 SMIM12Q96EX1 92 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 PMCHL2Q9BQD1 86 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 TMEM70Q9BUB7 260 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 OTORQ9NRC9 128 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 ZFP30Q9Y2G7 519 aa5.92□□□□□ -1.46
LIMA1-213ENST00000552720 FAM90A27PA6NNH2 459 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 B9A039 149 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 NPIPB6E9PJ23 425 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 CHEK1O14757 476 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 TCF21O43680 179 aa5.91□□□□□ -1.46
LIMA1-213ENST00000552720 LINC00614P0C842 121 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms