RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CEP295Q9C0D2 2601 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 TRAV38-1A0A0B4J264 116 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 MUC21A0A0G2JKD1 596 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 MUC21A0A140T8X8 626 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 C17orf51A8MQB3 221 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF207O43670 478 aaKnown RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 HBZP02008 142 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 LINC00869P0C866 280 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 CHTF8P0CG12 524 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 F2RP25116 425 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ATP6V0CP27449 155 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 OPRM1P35372 400 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF93P35789 620 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 PRR3P79522 188 aaKnown RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 MEF2BQ02080 365 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 IGFBP7Q16270 282 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 IAH1Q2TAA2 248 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF550Q7Z398 422 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 LGI3Q8N145 548 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ZFP62Q8NB50 900 aaPredicted RBP3.79□□□□□ -1.8
VPS13A-207ENST00000419472 OR5A1Q8NGJ0 315 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 OR2G3Q8NGZ4 309 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 BANF2Q9H503 90 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 ANXA10Q9UJ72 324 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 HSPB8Q9UJY1 196 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 SIGLEC9Q9Y336 463 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 U3KQA8 63 aa3.79□□□□□ -1.8
VPS13A-207ENST00000419472 SMIM26A0A096LP01 95 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 C21orf140B9A014 251 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 H0YJW9 148 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 BCL2P10415 239 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 PSG2P11465 335 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 IL3RAP26951 378 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 NANOS3P60323 173 aaKnown RBP3.78□□□□□ -1.8
VPS13A-207ENST00000419472 RPL23P62829 140 aaKnown RBP3.78□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF117Q03924 483 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 HES3Q5TGS1 186 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 TMEM42Q69YG0 159 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 MRPL54Q6P161 138 aaKnown RBP3.78□□□□□ -1.8
VPS13A-207ENST00000419472 OR4K13Q8NH42 304 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 SDF2Q99470 211 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 SAMD10Q9BYL1 202 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 FBXL15Q9H469 300 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 VPREB3Q9UKI3 123 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 WASHC3Q9Y3C0 194 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 HEATR5AQ86XA9 2040 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 TRAV8-4A0A0B4J246 113 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 DUXBA0A1W2PPF3 345 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 C17orf112F2Z3M2 114 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 CDC42EP2O14613 210 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 P01737 135 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 GNG4P50150 75 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 DLX6P56179 175 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 FXYD6P3P58550 94 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 FAM53BQ14153 422 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 ADIRFQ15847 76 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 MRPL2Q5T653 305 aaKnown RBP3.78□□□□□ -1.8
VPS13A-207ENST00000419472 LCN15Q6UWW0 184 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 C16orf47Q6ZP98 133 aaPredicted RBP3.78□□□□□ -1.8
VPS13A-207ENST00000419472 OR10P1Q8NGE3 313 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 OR5H2Q8NGV7 314 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 NT5CQ8TCD5 201 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 LYZL4Q96KX0 146 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 C19orf24Q9BVV8 132 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 ST20Q9HBF5 79 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 ATMQ13315 3056 aa3.78□□□□□ -1.8
VPS13A-207ENST00000419472 IGF2RP11717 2491 aa3.78□□□□□ -1.81
VPS13A-207ENST00000419472 DMXL2Q8TDJ6 3036 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 IGLV8-61A0A075B6I0 122 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 GRIFINA4D1Z8 144 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 DHRS3O75911 302 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 NRASP01111 189 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 TTRP02766 147 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 C3orf79P0CE67 100 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CFC1BP0CG36 223 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CFC1P0CG37 223 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 HIST1H1CP16403 213 aaKnown RBP3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CRISP2P16562 243 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF17P17021 662 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 COX7A1P24310 79 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 TAS2R46P59540 309 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CEACAM16Q2WEN9 425 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.77□□□□□ -1.81
VPS13A-207ENST00000419472 ZNF684Q5T5D7 378 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 TRAPPC6BQ86SZ2 158 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 PFN4Q8NHR9 129 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 PRTFDC1Q9NRG1 225 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 GNG13Q9P2W3 67 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 KIF26BQ2KJY2 2108 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 PCNX1Q96RV3 2341 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 MPDZO75970 2070 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 SPG11Q96JI7 2443 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 NUP210LQ5VU65 1888 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 C7orf71A4D174 169 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 H3BRM9 83 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 J3QR89 54 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 MOSP00540 346 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 RHOBP62745 196 aa3.77□□□□□ -1.81
VPS13A-207ENST00000419472 CLEC12BQ2HXU8 276 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms