RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TGIF2-C20orf24A0A0A6YYL0 155 aa14.27□□□□□ -0.12
USP39-201ENST00000323701 A0A1W2PRE2 83 aa14.27□□□□□ -0.12
USP39-201ENST00000323701 F6UZH7 168 aa14.27□□□□□ -0.12
USP39-201ENST00000323701 H3BRN7 92 aa14.27□□□□□ -0.12
USP39-201ENST00000323701 RPS10P46783 165 aaKnown RBP14.27□□□□□ -0.12
USP39-201ENST00000323701 ZNF329Q86UD4 541 aa14.27□□□□□ -0.12
USP39-201ENST00000323701 PPP5D1E7EU14 171 aa14.27□□□□□ -0.13
USP39-201ENST00000323701 RANP62826 216 aaKnown RBP14.27□□□□□ -0.13
USP39-201ENST00000323701 CFHR3Q02985 330 aa14.27□□□□□ -0.13
USP39-201ENST00000323701 ADIRFQ15847 76 aa14.27□□□□□ -0.13
USP39-201ENST00000323701 ARL2-SNX15V9GYD0 113 aa14.27□□□□□ -0.13
USP39-201ENST00000323701 TRBV12-3P01733 135 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 ATP5G2Q06055 141 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 OR5R1Q8NH85 324 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 C11orf52Q96A22 123 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 C17orf77Q96MU5 243 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 PRDM13Q9H4Q3 707 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 NBEAP1P0C6P0 100 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 MYCNOSP40205 109 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 TPPP2P59282 170 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 SIGLECL1Q8N7X8 197 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 LINC00479Q96M42 142 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 ZNF586Q9NXT0 402 aa14.26□□□□□ -0.13
USP39-201ENST00000323701 TOMM20LQ6UXN7 152 aa14.25□□□□□ -0.13
USP39-201ENST00000323701 EEF1AKMT3Q96AZ1 226 aa14.25□□□□□ -0.13
USP39-201ENST00000323701 IGLV1-40P01703 118 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 PNRC1Q12796 327 aaPredicted RBP14.24□□□□□ -0.13
USP39-201ENST00000323701 ZFAND3Q9H8U3 227 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 GNB4Q9HAV0 340 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 MRPS12O15235 138 aaKnown RBP14.24□□□□□ -0.13
USP39-201ENST00000323701 TGOLN2O43493 480 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 IGHV3-11P01762 117 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 PRB4P10163 310 aaPredicted RBP14.24□□□□□ -0.13
USP39-201ENST00000323701 HNF1AP20823 631 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 LINC01551Q86U37 167 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 STXBP6Q8NFX7 210 aa14.24□□□□□ -0.13
USP39-201ENST00000323701 TRBV7-1A0A0A6YYK4 115 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 CXorf65A6NEN9 183 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 FAM223BA6NKX1 122 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 PF4V1P10720 104 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 GNG5P63218 68 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 FAM223AQ8IWN6 122 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 CLPSL1A2RUU4 121 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 TMEM14CQ9P0S9 112 aa14.23□□□□□ -0.13
USP39-201ENST00000323701 RPL15P61313 204 aaKnown RBP14.22□□□□□ -0.13
USP39-201ENST00000323701 OCC1Q8TAD7 63 aa14.22□□□□□ -0.13
USP39-201ENST00000323701 ZNF702PQ9H963 129 aa14.22□□□□□ -0.13
USP39-201ENST00000323701 B4DEV8 164 aa14.22□□□□□ -0.13
USP39-201ENST00000323701 IGLC2P0DOY2 106 aa14.22□□□□□ -0.13
USP39-201ENST00000323701 SMR3AQ99954 134 aa14.22□□□□□ -0.13
USP39-201ENST00000323701 K7EN84 100 aa14.21□□□□□ -0.13
USP39-201ENST00000323701 SLC17A3O00476 420 aa14.21□□□□□ -0.13
USP39-201ENST00000323701 HOXA5P20719 270 aa14.21□□□□□ -0.13
USP39-201ENST00000323701 PGPA6NDG6 321 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 BRI3O95415 125 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 HIST1H1EP10412 219 aaKnown RBP14.2□□□□□ -0.14
USP39-201ENST00000323701 RAB9AP51151 201 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 EXOC3-AS1Q8N2X6 119 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 TRAV34A0A0B4J273 112 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 HELTA6NFD8 242 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 IFITM10A6NMD0 228 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 ZNF207O43670 478 aaKnown RBP14.2□□□□□ -0.14
USP39-201ENST00000323701 CD5LO43866 347 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 APOHP02749 345 aaPredicted RBP14.2□□□□□ -0.14
USP39-201ENST00000323701 BPIFA4PQ86YQ2 179 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 Q9H3A6 140 aa14.2□□□□□ -0.14
USP39-201ENST00000323701 IGHV3OR16-13A0A075B7E8 117 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 IGHV3-74A0A0B4J1X5 117 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 FOSL1P15407 271 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 CDX1P47902 265 aaPredicted RBP14.19□□□□□ -0.14
USP39-201ENST00000323701 SGK494Q96LW2 274 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 YAE1D1Q9NRH1 226 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 RABAC1Q9UI14 185 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 FLNBO75369 2602 aaKnown RBP14.19□□□□□ -0.14
USP39-201ENST00000323701 TRBV19A0A075B6N1 114 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 IGHV3-66A0A0C4DH42 116 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 H3BUA1 57 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 TRGC2P03986 189 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 PSMB8P28062 276 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 SSTP61278 116 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 CENPWQ5EE01 88 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 SMAD5-AS1Q9Y6J3 95 aa14.19□□□□□ -0.14
USP39-201ENST00000323701 IGHV3-49A0A0A0MS15 119 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BKO60814 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 IGHG4P01861 327 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BJP06899 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BOP23527 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BBP33778 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 NDUFA6P56556 154 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BDP58876 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BCP62807 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST2H2BEQ16778 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BHQ93079 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 OR5B12Q96R08 314 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BNQ99877 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 HIST1H2BMQ99879 126 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 TMEM242Q9NWH2 141 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 ZNF580Q9UK33 172 aa14.18□□□□□ -0.14
USP39-201ENST00000323701 SETD2Q9BYW2 2564 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms