RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 POTEIP0CG38 1075 aa20.64■□□□□ 0.89
CLN3-256ENST00000637107 POTEJP0CG39 1038 aa20.64■□□□□ 0.89
CLN3-256ENST00000637107 HIRAP54198 1017 aaPredicted RBP20.64■□□□□ 0.89
CLN3-256ENST00000637107 DIXDC1Q155Q3 683 aa20.64■□□□□ 0.89
CLN3-256ENST00000637107 ZNF384Q8TF68 577 aa20.64■□□□□ 0.89
CLN3-256ENST00000637107 PAG1Q9NWQ8 432 aa20.64■□□□□ 0.89
CLN3-256ENST00000637107 SNX14Q9Y5W7 946 aa20.64■□□□□ 0.89
CLN3-256ENST00000637107 HIP1O00291 1037 aa20.63■□□□□ 0.89
CLN3-256ENST00000637107 KIF3CO14782 793 aa20.63■□□□□ 0.89
CLN3-256ENST00000637107 KIF4BQ2VIQ3 1234 aa20.63■□□□□ 0.89
CLN3-256ENST00000637107 EAPPQ56P03 285 aaPredicted RBP20.63■□□□□ 0.89
CLN3-256ENST00000637107 RAI14Q9P0K7 980 aa20.63■□□□□ 0.89
CLN3-256ENST00000637107 MECOMQ03112 1051 aa20.63■□□□□ 0.89
CLN3-256ENST00000637107 CUL4AQ13619 759 aa20.63■□□□□ 0.89
CLN3-256ENST00000637107 SPTY2D1Q68D10 685 aaPredicted RBP20.63■□□□□ 0.89
CLN3-256ENST00000637107 UPF3BQ9BZI7 483 aaKnown RBP20.63■□□□□ 0.89
CLN3-256ENST00000637107 IDH1O75874 414 aaKnown RBP20.62■□□□□ 0.89
CLN3-256ENST00000637107 CRKP46108 304 aa20.62■□□□□ 0.89
CLN3-256ENST00000637107 RBM5P52756 815 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-256ENST00000637107 CFAP100Q494V2 611 aa20.62■□□□□ 0.89
CLN3-256ENST00000637107 DZIP1Q86YF9 867 aaKnown RBP20.62■□□□□ 0.89
CLN3-256ENST00000637107 NSUN4Q96CB9 384 aaKnown RBP20.62■□□□□ 0.89
CLN3-256ENST00000637107 DOCK2Q92608 1830 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 PTMSP20962 102 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 PTH1RQ03431 593 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 NBPF9Q3BBW0 867 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 SERPINA10Q9UK55 444 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 MYH2Q9UKX2 1941 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 WNT10BO00744 389 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 MAST3O60307 1309 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 ASTN2O75129 1339 aaPredicted RBP20.61■□□□□ 0.89
CLN3-256ENST00000637107 TTF1Q15361 905 aaPredicted RBP20.61■□□□□ 0.89
CLN3-256ENST00000637107 USP50Q70EL3 339 aaPredicted RBP20.61■□□□□ 0.89
CLN3-256ENST00000637107 RASEFQ8IZ41 740 aa20.61■□□□□ 0.89
CLN3-256ENST00000637107 NMIQ13287 307 aaPredicted RBP20.6■□□□□ 0.89
CLN3-256ENST00000637107 DLGAP5Q15398 846 aa20.6■□□□□ 0.89
CLN3-256ENST00000637107 PNMA8AQ86V59 439 aaPredicted RBP20.6■□□□□ 0.89
CLN3-256ENST00000637107 TEKT1Q969V4 418 aa20.6■□□□□ 0.89
CLN3-256ENST00000637107 PRMT6Q96LA8 375 aaPredicted RBP20.6■□□□□ 0.89
CLN3-256ENST00000637107 BAG4O95429 457 aaKnown RBP20.59■□□□□ 0.89
CLN3-256ENST00000637107 MMP14P50281 582 aa20.59■□□□□ 0.89
CLN3-256ENST00000637107 FSD1Q9BTV5 496 aa20.59■□□□□ 0.89
CLN3-256ENST00000637107 HDLBPQ00341 1268 aaKnown RBP20.59■□□□□ 0.89
CLN3-256ENST00000637107 PKP1Q13835 747 aa20.59■□□□□ 0.89
CLN3-256ENST00000637107 NOL8Q76FK4 1167 aaKnown RBP20.59■□□□□ 0.89
CLN3-256ENST00000637107 ZBED3Q96IU2 234 aaPredicted RBP20.59■□□□□ 0.89
CLN3-256ENST00000637107 FAM227BQ96M60 508 aa20.59■□□□□ 0.89
CLN3-256ENST00000637107 MRIQ9BWK5 157 aa20.59■□□□□ 0.89
CLN3-256ENST00000637107 SPDYE2BA6NHP3 402 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 CHGBP05060 677 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 SPDYE6P0CI01 402 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 HHIPL2Q6UWX4 724 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 MTMR14Q8NCE2 650 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 KCNB2Q92953 911 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 INTS4Q96HW7 963 aaKnown RBP20.58■□□□□ 0.88
CLN3-256ENST00000637107 DAGLAQ9Y4D2 1042 aa20.58■□□□□ 0.88
CLN3-256ENST00000637107 CCDC171Q6TFL3 1326 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 MAP3K12Q12852 859 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 SLFNL1Q499Z3 407 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 NAA16Q6N069 864 aaPredicted RBP20.57■□□□□ 0.88
CLN3-256ENST00000637107 APOBEC3HQ6NTF7 200 aaKnown RBP20.57■□□□□ 0.88
CLN3-256ENST00000637107 ADGRA1Q86SQ6 560 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 MAGEB6Q8N7X4 407 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 ZDHHC15Q96MV8 337 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 TTC14Q96N46 770 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 SKOR2Q2VWA4 1001 aaPredicted RBP20.57■□□□□ 0.88
CLN3-256ENST00000637107 SLC9C2Q5TAH2 1124 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 GZF1Q9H116 711 aaPredicted RBP20.57■□□□□ 0.88
CLN3-256ENST00000637107 SCAF8Q9UPN6 1271 aaKnown RBP20.57■□□□□ 0.88
CLN3-256ENST00000637107 CLEC11AQ9Y240 323 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 ZDHHC9Q9Y397 364 aa20.57■□□□□ 0.88
CLN3-256ENST00000637107 POLR2AP24928 1970 aaKnown RBP20.56■□□□□ 0.88
CLN3-256ENST00000637107 MAST2Q6P0Q8 1798 aa20.56■□□□□ 0.88
CLN3-256ENST00000637107 GOLGA6L22H0YM25 854 aa20.56■□□□□ 0.88
CLN3-256ENST00000637107 TDRD3Q9H7E2 651 aaKnown RBP20.56■□□□□ 0.88
CLN3-256ENST00000637107 MROH7-TTC4A0A0A0MT08 1334 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 GAKO14976 1311 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 A0A0D9SFI3 127 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 KBTBD3Q8NAB2 608 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 FAM163AQ96GL9 167 aaPredicted RBP20.55■□□□□ 0.88
CLN3-256ENST00000637107 MYH7P12883 1935 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 CLRN2A0PK11 232 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 PDE6AP16499 860 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 CYP7A1P22680 504 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 NECTIN1Q15223 517 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 ANGEL2Q5VTE6 544 aaKnown RBP20.55■□□□□ 0.88
CLN3-256ENST00000637107 LDHDQ86WU2 507 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 MAP4K1Q92918 833 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 GGA3Q9NZ52 723 aa20.55■□□□□ 0.88
CLN3-256ENST00000637107 GSTO1P78417 241 aa20.54■□□□□ 0.88
CLN3-256ENST00000637107 SLF2Q8IX21 1173 aa20.54■□□□□ 0.88
CLN3-256ENST00000637107 RBM8AQ9Y5S9 174 aaKnown RBP20.54■□□□□ 0.88
CLN3-256ENST00000637107 ECM29Q5VYK3 1845 aa20.54■□□□□ 0.88
CLN3-256ENST00000637107 MAP1SQ66K74 1059 aaPredicted RBP20.53■□□□□ 0.88
CLN3-256ENST00000637107 PGAP2Q9UHJ9 254 aa20.53■□□□□ 0.88
CLN3-256ENST00000637107 ZNF532Q9HCE3 1301 aa20.53■□□□□ 0.88
CLN3-256ENST00000637107 TCRBV5S4A2TA0A5A2 114 aa20.53■□□□□ 0.88
CLN3-256ENST00000637107 LDHCP07864 332 aa20.53■□□□□ 0.88
CLN3-256ENST00000637107 ADD2P35612 726 aa20.53■□□□□ 0.88
CLN3-256ENST00000637107 BTDP43251 543 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms