RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 TNFAIP1Q13829 316 aa24.67■■□□□ 1.54
PTCD3-220ENST00000627371 TMED8Q6PL24 325 aaPredicted RBP24.67■■□□□ 1.54
PTCD3-220ENST00000627371 PI4K2BQ8TCG2 481 aa24.67■■□□□ 1.54
PTCD3-220ENST00000627371 CDCA5Q96FF9 252 aa24.67■■□□□ 1.54
PTCD3-220ENST00000627371 TMOD2Q9NZR1 351 aa24.67■■□□□ 1.54
PTCD3-220ENST00000627371 PPP2R3BQ9Y5P8 575 aa24.67■■□□□ 1.54
PTCD3-220ENST00000627371 FOCADQ5VW36 1801 aa24.66■■□□□ 1.54
PTCD3-220ENST00000627371 GLRX3O76003 335 aaKnown RBP24.66■■□□□ 1.54
PTCD3-220ENST00000627371 BTDP43251 543 aa24.66■■□□□ 1.54
PTCD3-220ENST00000627371 CDC42EP5Q6NZY7 148 aa24.66■■□□□ 1.54
PTCD3-220ENST00000627371 DEFB129Q9H1M3 183 aa24.66■■□□□ 1.54
PTCD3-220ENST00000627371 STAP2Q9UGK3 403 aa24.66■■□□□ 1.54
PTCD3-220ENST00000627371 TMEM88BA6NKF7 163 aa24.65■■□□□ 1.54
PTCD3-220ENST00000627371 FKBP1CQ5VVH2 108 aa24.65■■□□□ 1.54
PTCD3-220ENST00000627371 TCP10L2B9ZVM9 353 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 CELF2O95319 508 aaKnown RBP24.64■■□□□ 1.54
PTCD3-220ENST00000627371 TNNI2P48788 182 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 CACNB3P54284 484 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 PDE1AP54750 535 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 CST9Q5W186 159 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 MAGEB6Q8N7X4 407 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 ZNF408Q9H9D4 720 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 CREBZFQ9NS37 354 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 USP40Q9NVE5 1235 aa24.64■■□□□ 1.54
PTCD3-220ENST00000627371 AK9Q5TCS8 1911 aa24.64■■□□□ 1.53
PTCD3-220ENST00000627371 PAPPA2Q9BXP8 1791 aa24.63■■□□□ 1.53
PTCD3-220ENST00000627371 RASA3Q14644 834 aa24.63■■□□□ 1.53
PTCD3-220ENST00000627371 ADGRA1Q86SQ6 560 aa24.63■■□□□ 1.53
PTCD3-220ENST00000627371 RFX7Q2KHR2 1363 aa24.63■■□□□ 1.53
PTCD3-220ENST00000627371 CYP7A1P22680 504 aa24.62■■□□□ 1.53
PTCD3-220ENST00000627371 RHBDL3P58872 404 aa24.62■■□□□ 1.53
PTCD3-220ENST00000627371 PRAMEF18Q5VWM3 479 aa24.62■■□□□ 1.53
PTCD3-220ENST00000627371 FAM83AQ86UY5 434 aa24.62■■□□□ 1.53
PTCD3-220ENST00000627371 NOL10Q9BSC4 688 aaKnown RBP24.62■■□□□ 1.53
PTCD3-220ENST00000627371 CNTNAP1P78357 1384 aa24.62■■□□□ 1.53
PTCD3-220ENST00000627371 MAP4K4O95819 1239 aaPredicted RBP24.61■■□□□ 1.53
PTCD3-220ENST00000627371 PDE6AP16499 860 aa24.61■■□□□ 1.53
PTCD3-220ENST00000627371 SLC9C2Q5TAH2 1124 aa24.61■■□□□ 1.53
PTCD3-220ENST00000627371 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.61■■□□□ 1.532e-8■■■■□ 22.3
PTCD3-220ENST00000627371 RPAP1Q9BWH6 1393 aaPredicted RBP24.6■■□□□ 1.53
PTCD3-220ENST00000627371 BAG3O95817 575 aa24.6■■□□□ 1.53
PTCD3-220ENST00000627371 PPP4CP60510 307 aa24.6■■□□□ 1.53
PTCD3-220ENST00000627371 NFIAQ12857 509 aa24.6■■□□□ 1.53
PTCD3-220ENST00000627371 PLEKHM2Q8IWE5 1019 aa24.6■■□□□ 1.53
PTCD3-220ENST00000627371 IDI2Q9BXS1 227 aa24.6■■□□□ 1.53
PTCD3-220ENST00000627371 AATFQ9NY61 560 aaKnown RBP eCLIP24.6■■□□□ 1.53
PTCD3-220ENST00000627371 SSC5DA1L4H1 1573 aa24.59■■□□□ 1.53
PTCD3-220ENST00000627371 KBTBD3Q8NAB2 608 aa24.59■■□□□ 1.53
PTCD3-220ENST00000627371 TMEM39BQ9GZU3 492 aa24.59■■□□□ 1.53
PTCD3-220ENST00000627371 TCRBV5S4A2TA0A5A2 114 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 WDHD1O75717 1129 aaPredicted RBP24.58■■□□□ 1.53
PTCD3-220ENST00000627371 PLCG2P16885 1265 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 NF2P35240 595 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 ADD2P35612 726 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 HTRA3P83110 453 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 CENPQQ7L2Z9 268 aaPredicted RBP24.58■■□□□ 1.53
PTCD3-220ENST00000627371 TEPSINQ96N21 525 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 OSBPL3Q9H4L5 887 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 GBA2Q9HCG7 927 aaPredicted RBP24.58■■□□□ 1.53
PTCD3-220ENST00000627371 FAM198AQ9UFP1 575 aa24.58■■□□□ 1.53
PTCD3-220ENST00000627371 ZNF532Q9HCE3 1301 aa24.58■■□□□ 1.52
PTCD3-220ENST00000627371 ERICH6BQ5W0A0 696 aa24.57■■□□□ 1.52
PTCD3-220ENST00000627371 ZSCAN25Q6NSZ9 544 aa24.57■■□□□ 1.52
PTCD3-220ENST00000627371 CERS3Q8IU89 383 aa24.57■■□□□ 1.52
PTCD3-220ENST00000627371 FAM151AQ8WW52 585 aa24.57■■□□□ 1.52
PTCD3-220ENST00000627371 CEP350Q5VT06 3117 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 ENTPD3O75355 529 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 NPM3O75607 178 aaKnown RBP24.56■■□□□ 1.52
PTCD3-220ENST00000627371 PDE4AP27815 886 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 RGS3P49796 1198 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 FKBP1BP68106 108 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 UBE3CQ15386 1083 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 SUPT20HL1Q3ZLR7 823 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 NBPF12Q5TAG4 269 aaPredicted RBP24.56■■□□□ 1.52
PTCD3-220ENST00000627371 TEX11Q8IYF3 940 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 C2orf69Q8N8R5 385 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 MIGA1Q8NAN2 632 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 SH3RF3Q8TEJ3 882 aaPredicted RBP24.56■■□□□ 1.52
PTCD3-220ENST00000627371 CCDC136Q96JN2 1154 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 ABT1Q9ULW3 272 aaKnown RBP24.56■■□□□ 1.52
PTCD3-220ENST00000627371 TLL2Q9Y6L7 1015 aa24.56■■□□□ 1.52
PTCD3-220ENST00000627371 MYH1P12882 1939 aa24.55■■□□□ 1.52
PTCD3-220ENST00000627371 DYNLL1P63167 89 aaKnown RBP24.55■■□□□ 1.52
PTCD3-220ENST00000627371 TCP10Q12799 353 aa24.55■■□□□ 1.52
PTCD3-220ENST00000627371 SAPCD2Q86UD0 394 aa24.55■■□□□ 1.52
PTCD3-220ENST00000627371 CDAN1Q8IWY9 1227 aa24.55■■□□□ 1.52
PTCD3-220ENST00000627371 DDX4Q9NQI0 724 aaKnown RBP24.55■■□□□ 1.52
PTCD3-220ENST00000627371 OTOFQ9HC10 1997 aa24.54■■□□□ 1.52
PTCD3-220ENST00000627371 NAV1Q8NEY1 1877 aa24.54■■□□□ 1.52
PTCD3-220ENST00000627371 PICALMQ13492 652 aa24.54■■□□□ 1.52
PTCD3-220ENST00000627371 RIOK1Q9BRS2 568 aaKnown RBP24.54■■□□□ 1.52
PTCD3-220ENST00000627371 COL2A1P02458 1487 aaPredicted RBP24.53■■□□□ 1.52
PTCD3-220ENST00000627371 MAGEB6P1A0A0J9YX57 407 aa24.53■■□□□ 1.52
PTCD3-220ENST00000627371 LRRFIP1Q32MZ4 808 aaKnown RBP24.53■■□□□ 1.52
PTCD3-220ENST00000627371 EVI5LQ96CN4 794 aa24.53■■□□□ 1.52
PTCD3-220ENST00000627371 RASSF10A6NK89 507 aa24.52■■□□□ 1.52
PTCD3-220ENST00000627371 CHGBP05060 677 aa24.52■■□□□ 1.52
PTCD3-220ENST00000627371 ZFYP08048 801 aaPredicted RBP24.52■■□□□ 1.52
PTCD3-220ENST00000627371 SLFNL1Q499Z3 407 aa24.52■■□□□ 1.52
PTCD3-220ENST00000627371 ZFPM1Q8IX07 1006 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms