RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 ZAP70P43403 619 aa23.4■■□□□ 1.34
SYNE4-202ENST00000340477 CACNB3P54284 484 aa23.4■■□□□ 1.34
SYNE4-202ENST00000340477 FAM83AQ86UY5 434 aa23.4■■□□□ 1.34
SYNE4-202ENST00000340477 GPATCH3Q96I76 525 aa23.4■■□□□ 1.34
SYNE4-202ENST00000340477 USP40Q9NVE5 1235 aa23.4■■□□□ 1.34
SYNE4-202ENST00000340477 ZNF157P51786 506 aaPredicted RBP23.39■■□□□ 1.33
SYNE4-202ENST00000340477 PRKG1Q13976 671 aa23.39■■□□□ 1.33
SYNE4-202ENST00000340477 CDC42EP5Q6NZY7 148 aa23.39■■□□□ 1.33
SYNE4-202ENST00000340477 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.39■■□□□ 1.33
SYNE4-202ENST00000340477 CCDC102AQ96A19 550 aa23.39■■□□□ 1.33
SYNE4-202ENST00000340477 NSUN4Q96CB9 384 aaKnown RBP23.39■■□□□ 1.33
SYNE4-202ENST00000340477 FAM163AQ96GL9 167 aaPredicted RBP23.39■■□□□ 1.33
SYNE4-202ENST00000340477 THSD7BQ9C0I4 1608 aa23.39■■□□□ 1.33
SYNE4-202ENST00000340477 AK9Q5TCS8 1911 aa23.38■■□□□ 1.33
SYNE4-202ENST00000340477 CYP2E1P05181 493 aaPredicted RBP23.38■■□□□ 1.33
SYNE4-202ENST00000340477 BTDP43251 543 aa23.38■■□□□ 1.33
SYNE4-202ENST00000340477 TTF1Q15361 905 aaPredicted RBP23.38■■□□□ 1.33
SYNE4-202ENST00000340477 NAA16Q6N069 864 aaPredicted RBP23.38■■□□□ 1.33
SYNE4-202ENST00000340477 ANGEL1Q9UNK9 670 aaKnown RBP23.38■■□□□ 1.33
SYNE4-202ENST00000340477 RPAP1Q9BWH6 1393 aaPredicted RBP23.38■■□□□ 1.33
SYNE4-202ENST00000340477 IREB2P48200 963 aaKnown RBP23.37■■□□□ 1.33
SYNE4-202ENST00000340477 NBPF12Q5TAG4 269 aaPredicted RBP23.37■■□□□ 1.33
SYNE4-202ENST00000340477 TMEM39BQ9GZU3 492 aa23.37■■□□□ 1.33
SYNE4-202ENST00000340477 DOCK2Q92608 1830 aa23.37■■□□□ 1.33
SYNE4-202ENST00000340477 MYO5AQ9Y4I1 1855 aaKnown RBP23.36■■□□□ 1.33
SYNE4-202ENST00000340477 SMARCA5O60264 1052 aaPredicted RBP23.36■■□□□ 1.33
SYNE4-202ENST00000340477 IDH1O75874 414 aaKnown RBP23.36■■□□□ 1.33
SYNE4-202ENST00000340477 MAP4K4O95819 1239 aaPredicted RBP23.36■■□□□ 1.33
SYNE4-202ENST00000340477 MAP3K12Q12852 859 aa23.36■■□□□ 1.33
SYNE4-202ENST00000340477 NOGQ13253 232 aa23.36■■□□□ 1.33
SYNE4-202ENST00000340477 SSC5DA1L4H1 1573 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 GPR75-ASB3A0A0A6YYF3 556 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 UBE2Q2LH0YL09 131 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 BAG3O95817 575 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 MAP2K2P36507 400 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 HDAC1Q13547 482 aaPredicted RBP23.35■■□□□ 1.33
SYNE4-202ENST00000340477 TMED8Q6PL24 325 aaPredicted RBP23.35■■□□□ 1.33
SYNE4-202ENST00000340477 MOB2Q70IA6 237 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 FAM151AQ8WW52 585 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 AIDAQ96BJ3 306 aa23.35■■□□□ 1.33
SYNE4-202ENST00000340477 DNAJC2Q99543 621 aaKnown RBP23.35■■□□□ 1.33
SYNE4-202ENST00000340477 PLCG2P16885 1265 aa23.34■■□□□ 1.33
SYNE4-202ENST00000340477 MAP2K1Q02750 393 aaPredicted RBP23.34■■□□□ 1.33
SYNE4-202ENST00000340477 EXOC6Q8TAG9 804 aa23.34■■□□□ 1.33
SYNE4-202ENST00000340477 GCC1Q96CN9 775 aa23.34■■□□□ 1.33
SYNE4-202ENST00000340477 BEGAINQ9BUH8 593 aa23.34■■□□□ 1.33
SYNE4-202ENST00000340477 PIH1D3Q9NQM4 214 aaKnown RBP23.34■■□□□ 1.33
SYNE4-202ENST00000340477 ATP5JP18859 108 aa23.33■■□□□ 1.33
SYNE4-202ENST00000340477 TCP10Q12799 353 aa23.33■■□□□ 1.33
SYNE4-202ENST00000340477 DCAF15Q66K64 600 aa23.33■■□□□ 1.33
SYNE4-202ENST00000340477 TEPSINQ96N21 525 aa23.33■■□□□ 1.33
SYNE4-202ENST00000340477 RWDD1Q9H446 243 aaPredicted RBP23.33■■□□□ 1.33
SYNE4-202ENST00000340477 UNCXA6NJT0 531 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 AOC2O75106 756 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 ENTPD3O75355 529 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 SLC10A3P09131 477 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 MAP3K11Q16584 847 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 ZNF384Q8TF68 577 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 IDI2Q9BXS1 227 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 ECHDC1Q9NTX5 307 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 NDUFB9Q9Y6M9 179 aa23.32■■□□□ 1.32
SYNE4-202ENST00000340477 GOLIM4O00461 696 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 RGS3P49796 1198 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 NFIAQ12857 509 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 PICALMQ13492 652 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 RASAL3Q86YV0 1011 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 CERS3Q8IU89 383 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 BOLA2Q9H3K6 86 aa23.31■■□□□ 1.32
SYNE4-202ENST00000340477 HSPA1AP0DMV8 641 aaKnown RBP23.3■■□□□ 1.32
SYNE4-202ENST00000340477 HSPA1BP0DMV9 641 aaKnown RBP23.3■■□□□ 1.32
SYNE4-202ENST00000340477 CYP7A1P22680 504 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 ZSCAN29Q8IWY8 852 aaPredicted RBP23.3■■□□□ 1.32
SYNE4-202ENST00000340477 TEX11Q8IYF3 940 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 ANKRD13AQ8IZ07 590 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 MAGEB6Q8N7X4 407 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 PAG1Q9NWQ8 432 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 AATFQ9NY61 560 aaKnown RBP eCLIP23.3■■□□□ 1.32
SYNE4-202ENST00000340477 FAM198AQ9UFP1 575 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 OTOFQ9HC10 1997 aa23.3■■□□□ 1.32
SYNE4-202ENST00000340477 RFX7Q2KHR2 1363 aa23.29■■□□□ 1.32
SYNE4-202ENST00000340477 LDLRAD1Q5T700 205 aa23.29■■□□□ 1.32
SYNE4-202ENST00000340477 CDAN1Q8IWY9 1227 aa23.29■■□□□ 1.32
SYNE4-202ENST00000340477 SLC10A4Q96EP9 437 aa23.29■■□□□ 1.32
SYNE4-202ENST00000340477 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.29■■□□□ 1.32
SYNE4-202ENST00000340477 ANTXR1Q9H6X2 564 aa23.29■■□□□ 1.32
SYNE4-202ENST00000340477 FZD1Q9UP38 647 aa23.29■■□□□ 1.32
SYNE4-202ENST00000340477 MYH7P12883 1935 aa23.28■■□□□ 1.32
SYNE4-202ENST00000340477 ANKRD45Q5TZF3 282 aa23.28■■□□□ 1.32
SYNE4-202ENST00000340477 REM2Q8IYK8 340 aaPredicted RBP23.28■■□□□ 1.32
SYNE4-202ENST00000340477 HAUS7Q99871 368 aa23.28■■□□□ 1.32
SYNE4-202ENST00000340477 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.28■■□□□ 1.32
SYNE4-202ENST00000340477 CSADQ9Y600 493 aa23.28■■□□□ 1.32
SYNE4-202ENST00000340477 FAM155AB1AL88 458 aaPredicted RBP23.27■■□□□ 1.32
SYNE4-202ENST00000340477 ERC2O15083 957 aa23.27■■□□□ 1.32
SYNE4-202ENST00000340477 USP2O75604 605 aaPredicted RBP23.27■■□□□ 1.32
SYNE4-202ENST00000340477 NPM3O75607 178 aaKnown RBP23.27■■□□□ 1.32
SYNE4-202ENST00000340477 WDHD1O75717 1129 aaPredicted RBP23.27■■□□□ 1.32
SYNE4-202ENST00000340477 RHBDL3P58872 404 aa23.27■■□□□ 1.32
SYNE4-202ENST00000340477 CSRNP1Q96S65 589 aa23.27■■□□□ 1.32
SYNE4-202ENST00000340477 ZNF341Q9BYN7 854 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms