RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	NUP62	P37198	522 aa	Predicted RBP	11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	PSMB3	P49720	205 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	DAD1	P61803	113 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	SPATA31B1P	Q5VZV4	182 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	C15orf53	Q8NAA6	179 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	OR51G1	Q8NGK1	321 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	COQ8A	Q8NI60	647 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	C7orf50	Q9BRJ6	194 aa	Known RBP	11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	ATG101	Q9BSB4	218 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	WDR12	Q9GZL7	423 aa	Known RBP	11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	SLC35B3	Q9H1N7	401 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	KLK11	Q9UBX7	282 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	PFDN2	Q9UHV9	154 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	CEBPZOS	A8MTT3	80 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	NXPH3	O95157	252 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	CDS2	O95674	445 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	CD3D	P04234	171 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	ELK1	P19419	428 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	RORC	P51449	518 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	PSG9	Q00887	426 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	ZNF79	Q15937	498 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	RRN3P1	Q2M238	152 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	RNASE12	Q5GAN4	147 aa	Known RBP	11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	GSG1L	Q6UXU4	331 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	C1orf158	Q8N1D5	194 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	RNF125	Q96EQ8	232 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	TMEM222	Q9H0R3	208 aa		11.13	□□□□□ -0.63
LMNA-223	ENST00000515459	TBP	P20226	339 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	EBLN2	Q6P2I7	272 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	NOXA1	Q86UR1	476 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	C6orf223	Q8N319	242 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	OR13C8	Q8NGS7	320 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	TERB2	Q8NHR7	220 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	TMEM170A	Q8WVE7	144 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	YIPF6	Q96EC8	236 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	PBDC1	Q9BVG4	233 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	CACNG5	Q9UF02	275 aa		11.12	□□□□□ -0.63
LMNA-223	ENST00000515459	NBDY	A0A0U1RRE5	68 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	HPGDS	O60760	199 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	OR5AC1	P0C628	307 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	PAX9	P55771	341 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	FAM78B	Q5VT40	261 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	OR8G2P	Q6IF36	304 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459		Q8N1X5	172 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	GLYATL2	Q8WU03	294 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	RBPMS	Q93062	196 aa	Known RBP	11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	ABHD1	Q96SE0	405 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	MAGT1	Q9H0U3	335 aa		11.11	□□□□□ -0.63
LMNA-223	ENST00000515459	SOCS3	O14543	225 aa		11.1	□□□□□ -0.63
LMNA-223	ENST00000515459	ALDH3B2	P48448	385 aa		11.1	□□□□□ -0.63
LMNA-223	ENST00000515459	SCGB2B2	Q4G0G5	96 aa		11.1	□□□□□ -0.63
LMNA-223	ENST00000515459	LHFPL5	Q8TAF8	219 aa		11.1	□□□□□ -0.63
LMNA-223	ENST00000515459	MARCH1	Q8TCQ1	289 aa		11.1	□□□□□ -0.63
LMNA-223	ENST00000515459	GPR146	Q96CH1	333 aa		11.1	□□□□□ -0.63
LMNA-223	ENST00000515459	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	11.09	□□□□□ -0.63
LMNA-223	ENST00000515459		F6UB75	175 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	ISLR	O14498	428 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	TNFAIP8	O95379	198 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	SUPT4H1	P63272	117 aa	Known RBP	11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	KLF9	Q13886	244 aa	Predicted RBP	11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	NMS	Q5H8A3	153 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	C1orf194	Q5T5A4	169 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	SELENOH	Q8IZQ5	122 aa	Known RBP	11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	OR4D10	Q8NGI6	311 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	OR52I2	Q8NH67	350 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	ZNRF2	Q8NHG8	242 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	TMEM208	Q9BTX3	173 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	MTFP1	Q9UDX5	166 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	CACFD1	Q9UGQ2	172 aa		11.09	□□□□□ -0.63
LMNA-223	ENST00000515459	C14orf166	Q9Y224	244 aa	Known RBP	11.09	□□□□□ -0.63
LMNA-223	ENST00000515459		A0A0J9YX75	114 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	ZFP92	A6NM28	416 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	FAM25A	B3EWG3	89 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	FAM25C	B3EWG5	89 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	FAM25G	B3EWG6	89 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	ATP6V1G2	O95670	118 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	MEF2D	Q14814	521 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	TMEM268	Q5VZI3	342 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	NAA60	Q9H7X0	242 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	RPRM	Q9NS64	109 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459		U3KQ87	197 aa		11.08	□□□□□ -0.64
LMNA-223	ENST00000515459	LYRM9	A8MSI8	78 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	RAB3D	O95716	219 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	TAS2R19	P59542	299 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	LYZ	P61626	148 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	NCS1	P62166	190 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	ZNF90	Q03938	601 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	SAMD13	Q5VXD3	122 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	IGF2BP2-AS1	Q96M15	143 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	RTBDN	Q9BSG5	229 aa	Predicted RBP	11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	VCX3A	Q9NNX9	186 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	DOK5	Q9P104	306 aa		11.07	□□□□□ -0.64
LMNA-223	ENST00000515459	NUDT3	O95989	172 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	FABP1	P07148	127 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	SULT1A3	P0DMM9	295 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	SULT1A4	P0DMN0	295 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	CCL18	P55774	89 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	MZT2A	Q6P582	158 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	OR8I2	Q8N0Y5	310 aa		11.06	□□□□□ -0.64
LMNA-223	ENST00000515459	TMEM229B	Q8NBD8	167 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms