RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF718Q3SXZ3 478 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CT45A1Q5HYN5 189 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 ZBTB34Q8NCN2 500 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CT45A3Q8NHU0 189 aa8.4□□□□□ -1.06
VPS39-214ENST00000614932 CSDC2Q9Y534 153 aaKnown RBP8.4□□□□□ -1.06
VPS39-214ENST00000614932 IGKV1D-13A0A0B4J2D9 117 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 CXorf1O96002 111 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 ARL14EPLP0DKL9 152 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 IGKV1-13P0DP09 117 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 RSPO1Q2MKA7 263 aaPredicted RBP8.39□□□□□ -1.07
VPS39-214ENST00000614932 FGFBP3Q8TAT2 258 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 C18orf15Q96N68 181 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 YTHDF2Q9Y5A9 579 aaKnown RBP8.39□□□□□ -1.07
VPS39-214ENST00000614932 FREM1Q5H8C1 2179 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 PRSS29PA6NIE9 313 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 H3BMG7 143 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 FOXH1O75593 365 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 ACP1P24666 158 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 CENPWQ5EE01 88 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 Q6ZPA2 131 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 Q8TCH9 128 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 NABP1Q96AH0 204 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 PIGLQ9Y2B2 252 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 POLDIP2Q9Y2S7 368 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 C21orf140B9A014 251 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 M0R135 149 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 G6PCP35575 357 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 B3GALT5-AS1P59052 145 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 GDF5OSQ5U4N7 250 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 ZNF799Q96GE5 643 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 TMEM133Q9H2Q1 129 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 NGBQ9NPG2 151 aa8.39□□□□□ -1.07
VPS39-214ENST00000614932 A0A096LPE4 126 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 A0A1B0GWB2 263 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 A0A1W2PPZ6 126 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 PDCD6O75340 191 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 MFAP2P55001 183 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 ANXA2RQ3ZCQ2 193 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 SPATA46Q5T0L3 261 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 IBA57Q5T440 356 aaKnown RBP8.38□□□□□ -1.07
VPS39-214ENST00000614932 GGNQ86UU5 652 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 GJC3Q8NFK1 279 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 ATP6V0E2Q8NHE4 81 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 NRGNQ92686 78 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 PRO0461Q9UI25 63 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 INSIG2Q9Y5U4 225 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 CNOT1A5YKK6 2376 aaKnown RBP8.38□□□□□ -1.07
VPS39-214ENST00000614932 DSPP15924 2871 aaKnown RBP8.38□□□□□ -1.07
VPS39-214ENST00000614932 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.38□□□□□ -1.07
VPS39-214ENST00000614932 CENPVL3A0A0U1RRI6 287 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 E9PLD3 99 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 SPRY1O43609 319 aaPredicted RBP8.38□□□□□ -1.07
VPS39-214ENST00000614932 MALLQ13021 153 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 RTL8BQ17RB0 113 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 TRAT1Q6PIZ9 186 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 PQLC2Q6ZP29 291 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 AAED1Q7RTV5 226 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 GLMPQ8WWB7 406 aa8.38□□□□□ -1.07
VPS39-214ENST00000614932 FAM90A26D6RGX4 464 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 CDX4O14627 284 aaPredicted RBP8.37□□□□□ -1.07
VPS39-214ENST00000614932 ZNF32P17041 273 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 FOXG1P55316 489 aaPredicted RBP8.37□□□□□ -1.07
VPS39-214ENST00000614932 OR51H1Q8NH63 302 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 PRELID3AQ96N28 172 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 TEX50A0A1B0GTY4 177 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 TUSC2O75896 110 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 IGHG4P01861 327 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 CD59P13987 128 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 PSG5Q15238 335 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 ZADH2Q8N4Q0 377 aa8.37□□□□□ -1.07
VPS39-214ENST00000614932 DAZAP1Q96EP5 407 aaKnown RBP8.37□□□□□ -1.07
VPS39-214ENST00000614932 RRHO14718 337 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 IGKV1-39P01597 117 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 IGKV1D-39P04432 117 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 MAGEA5P43359 124 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 FHL3Q13643 280 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 PIGYQ3MUY2 71 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 PHLDA1Q8WV24 401 aaPredicted RBP8.36□□□□□ -1.07
VPS39-214ENST00000614932 TRIB1Q96RU8 372 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 ZNF442Q9H7R0 627 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 PMS2P5A8MQ11 134 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 TGFAP01135 160 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 IGKV1-5P01602 117 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 OPRK1P41145 380 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 NDUFV3P56181 108 aaKnown RBP8.36□□□□□ -1.07
VPS39-214ENST00000614932 ATP5IP56385 69 aaPredicted RBP8.36□□□□□ -1.07
VPS39-214ENST00000614932 DIAPH2-AS1Q14236 149 aa8.36□□□□□ -1.07
VPS39-214ENST00000614932 DHRS3O75911 302 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 GCSHP23434 173 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 EDDM3BP56851 147 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 TMEM116Q8NCL8 245 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 PPP1R35Q8TAP8 253 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 IL1F10Q8WWZ1 152 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 PCNX2A6NKB5 2137 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 AREGP15514 252 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 FXYD2P54710 66 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 TM4SF20Q53R12 229 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 C10orf128Q5T292 105 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 HES3Q5TGS1 186 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 OSR2Q8N2R0 312 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms