RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	RAP1GDS1	P52306	607 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	EMP1	P54849	157 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	CTBP2	P56545	445 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	CLDN12	P56749	244 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	MAP3K7CL	P57077	242 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	CXCR4	P61073	352 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	TBPL1	P62380	186 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	SKP1	P63208	163 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	LGALS9B	Q3B8N2	356 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	FAM201A	Q5SY85	155 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	RIBC1	Q8N443	379 aa	Predicted RBP	0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	TMEM251	Q8N6I4	163 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	DAND5	Q8N907	189 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	ANKRD36BP1	Q96IX9	119 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	TIMM21	Q9BVV7	248 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	IMP3	Q9NV31	184 aa	Known RBP	0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	BABAM2	Q9NXR7	383 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	EURL	Q9NYK6	297 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	DOK5	Q9P104	306 aa		0.84	□□□□□ -2.27
PRKDC-210	ENST00000541488	RNF213	Q63HN8	5207 aa		0.84	□□□□□ -2.28
PRKDC-210	ENST00000541488	CNTRL	Q7Z7A1	2325 aa		0.84	□□□□□ -2.28
PRKDC-210	ENST00000541488	DOCK10	Q96BY6	2186 aa		0.84	□□□□□ -2.28
PRKDC-210	ENST00000541488	SON	P18583	2426 aa	Known RBP	0.84	□□□□□ -2.28
PRKDC-210	ENST00000541488	ROBO3	Q96MS0	1386 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	ZGRF1	Q86YA3	2104 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	MUC4	Q99102	2169 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	ANK3	Q12955	4377 aa	Known RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	IGHV3-64	A0A075B6Q5	118 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	MEIKIN	A0A087WXM9	373 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488		A0A0A6YYH2	397 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488		A6NJ64	397 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488		C9JCJ5	164 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	GOLGA8K	D6RF30	607 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488		F8W036	122 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	GOLGA8M	H3BSY2	632 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	TXNDC9	O14530	226 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	ADAP1	O75689	374 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	APOM	O95445	188 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	UGT2B7	P16662	529 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	CXCL3	P19876	107 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	PEBP1	P30086	187 aa	Known RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	ALDH3A1	P30838	453 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	CDC34	P49427	236 aa	Predicted RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	FXYD7	P58549	80 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	TAS2R20	P59543	309 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	KRTAP10-4	P60372	401 aa	Predicted RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	UBE2G2	P60604	165 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	AP1S1	P61966	158 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	GLO1	Q04760	184 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	AKR1C1	Q04828	323 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	OR10K2	Q6IF99	312 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	LYZL1	Q6UWQ5	148 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	SPATA12	Q7Z6I5	190 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	OR13C8	Q8NGS7	320 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	ZNF563	Q8TA94	476 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	C12orf43	Q96C57	262 aa	Known RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	CMTM5	Q96DZ9	223 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	ZNF625	Q96I27	306 aa	Predicted RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	KCTD7	Q96MP8	289 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	DERL2	Q9GZP9	239 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	C8orf4	Q9NR00	106 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	PLEKHJ1	Q9NW61	149 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	TAAR3P	Q9P1P4	343 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	POLR3H	Q9Y535	204 aa	Predicted RBP	0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	MYO3B	Q8WXR4	1341 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	FAT4	Q6V0I7	4981 aa		0.83	□□□□□ -2.28
PRKDC-210	ENST00000541488	CMYA5	Q8N3K9	4069 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	ESPL1	Q14674	2120 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	MYH1	P12882	1939 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	MYH8	P13535	1937 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	TRGV2	A0A075B6R0	118 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	TMSB15B	A0A087X1C1	80 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	C1orf232	A0A0U1RR37	186 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	C5orf67	F2Z3F1	127 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	APOE	P02649	317 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	HLA-DQB2	P05538	268 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	C8orf88	P0DMB2	117 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	PSMB8	P28062	276 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	CD40LG	P29965	261 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	TMEM258	P61165	79 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	DMTN	Q08495	405 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	MIA	Q16674	131 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	SLC36A2	Q495M3	483 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	FAM78B	Q5VT40	261 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	TMEM42	Q69YG0	159 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	NAA40	Q86UY6	237 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	UBL4B	Q8N7F7	174 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	OR8B12	Q8NGG6	310 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	HAVCR2	Q8TDQ0	301 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	RNF133	Q8WVZ7	376 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	DNAJB3	Q8WWF6	145 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	SLC7A6	Q92536	515 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	RNASE6	Q93091	150 aa	Known RBP	0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	SFRP2	Q96HF1	295 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	CCL13	Q99616	98 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	TMEM109	Q9BVC6	243 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	OR51I2	Q9H344	312 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	XAGE1A	Q9HD64	81 aa		0.82	□□□□□ -2.28
PRKDC-210	ENST00000541488	ZNHIT6	Q9NWK9	470 aa	Known RBP	0.82	□□□□□ -2.28

Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms