RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 LY6G6CO95867 125 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 RPL35AP18077 110 aaKnown RBP5.23□□□□□ -1.57
VPS41-208ENST00000448833 ELK1P19419 428 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 TGFBR1P36897 503 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 HTR2BP41595 481 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 AP2S1P53680 142 aaPredicted RBP5.23□□□□□ -1.57
VPS41-208ENST00000448833 VBP1P61758 197 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 MEF2DQ14814 521 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 TRIM16LQ309B1 348 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 FAM90A2PQ658T7 463 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 TCF24Q7RTU0 167 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 TMEM229BQ8NBD8 167 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 RNASE11Q8TAA1 199 aaKnown RBP5.23□□□□□ -1.57
VPS41-208ENST00000448833 TMEM230Q96A57 120 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 METTL26Q96S19 204 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 ABHD1Q96SE0 405 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 RARRES2Q99969 163 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.23□□□□□ -1.57
VPS41-208ENST00000448833 MTFP1Q9UDX5 166 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 IGHV3OR16-8A0A075B7F1 116 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 GABARAPH6UMI1 98 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 M0QYG6 137 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 GABARAPO95166 117 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 IGKV1-39P01597 117 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 CD3DP04234 171 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 IGKV1D-39P04432 117 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 OPRK1P41145 380 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 TFPI2P48307 235 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 HOXA1P49639 335 aaPredicted RBP5.22□□□□□ -1.57
VPS41-208ENST00000448833 SPCS3P61009 180 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 NCS1P62166 190 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 DHODHQ02127 395 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 PMS2P11Q13670 270 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 TMEM187Q14656 261 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 SURF2Q15527 256 aaPredicted RBP5.22□□□□□ -1.57
VPS41-208ENST00000448833 PVRIGQ6DKI7 326 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 ETFRF1Q6IPR1 90 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 MORN3Q6PF18 240 aaPredicted RBP5.22□□□□□ -1.57
VPS41-208ENST00000448833 TOMM20LQ6UXN7 152 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 LHFPL1Q86WI0 220 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 APRG1Q8IVJ8 170 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 STHQ8IWL8 128 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 OR4X1Q8NH49 305 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 OR52E5Q8NH55 327 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 C11orf45Q8TAV5 145 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 PHLDA1Q8WV24 401 aaPredicted RBP5.22□□□□□ -1.57
VPS41-208ENST00000448833 SCGB3A2Q96PL1 93 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 MS4A6AQ9H2W1 248 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 C11orf68Q9H3H3 251 aaKnown RBP5.22□□□□□ -1.57
VPS41-208ENST00000448833 VSIRQ9H7M9 311 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 EXTL2Q9UBQ6 330 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 KLK11Q9UBX7 282 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 PFDN2Q9UHV9 154 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 C14orf166Q9Y224 244 aaKnown RBP5.22□□□□□ -1.57
VPS41-208ENST00000448833 KCNIP3Q9Y2W7 256 aa5.22□□□□□ -1.57
VPS41-208ENST00000448833 PUS1Q9Y606 427 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS41-208ENST00000448833 IGKV3-7A0A075B6H7 116 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 A0A0B4J293 547 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 TEX13DA0A0J9YY54 714 aaPredicted RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 HELTA6NFD8 242 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 DISC1C4P0D8 188 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 C11orf94C9JXX5 98 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 RGS5O15539 181 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 CLN5O75503 358 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 CDS2O95674 445 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 RAB3DO95716 219 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 IGKV1-5P01602 117 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 SPP1P10451 314 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 SLC25A4P12235 298 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 UCP1P25874 307 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 ETV6P41212 452 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 ATP5IP56385 69 aaPredicted RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 NUTF2P61970 127 aaKnown RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 RBMS2Q15434 407 aaKnown RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 SCGB2B2Q4G0G5 96 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 LGALS9CQ6DKI2 356 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 STEAP1BQ6NZ63 245 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 GBGT1Q8N5D6 347 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 OR11H2Q8NH07 326 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 OR52I2Q8NH67 350 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 RNASEH2CQ8TDP1 164 aaKnown RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 Q8WTZ3 238 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 TP53RKQ96S44 253 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 TMEM222Q9H0R3 208 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 HEYLQ9NQ87 328 aaPredicted RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 DNAH1Q9P2D7 4330 aa5.21□□□□□ -1.58
VPS41-208ENST00000448833 EPPK1P58107 5090 aaKnown RBP5.21□□□□□ -1.58
VPS41-208ENST00000448833 IGHV3-49A0A0A0MS15 119 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 CA1P00915 261 aaPredicted RBP5.2□□□□□ -1.58
VPS41-208ENST00000448833 IGHV3-48P01763 117 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 CD74P04233 296 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 P0C879 139 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 RNASE2P10153 161 aaKnown RBP5.2□□□□□ -1.58
VPS41-208ENST00000448833 PI3P19957 117 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 CRYBB3P26998 211 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 NUP62P37198 522 aaPredicted RBP5.2□□□□□ -1.58
VPS41-208ENST00000448833 AARDQ4LEZ3 155 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 GPR107Q5VW38 600 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 OR1S2Q8NGQ3 325 aa5.2□□□□□ -1.58
VPS41-208ENST00000448833 C2CD4CQ8TF44 421 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms