RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 C19orf24Q9BVV8 132 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 SSBP4Q9BWG4 385 aaPredicted RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 RAB9BQ9NP90 201 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 AMMECR1Q9Y4X0 333 aaPredicted RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 RAI1Q7Z5J4 1906 aaPredicted RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 CFAP47Q6ZTR5 3102 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 CDX4O14627 284 aaPredicted RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 C19orf35Q6ZS72 473 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 MBD6Q96DN6 1003 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 GAFA1Q96PS6 74 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 MRPL32Q9BYC8 188 aaKnown RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 REG1AP05451 166 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 C21orf62-AS1Q17RA5 79 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 STUMQ69YW2 141 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 Q6ZVH6 145 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 NUP35Q8NFH5 326 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 MRPL27Q9P0M9 148 aaKnown RBP13.29□□□□□ -0.28
SDC4-201ENST00000372733 HSBP1O75506 76 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 SELENOVP59797 346 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 RPL8P62917 257 aaKnown RBP13.29□□□□□ -0.28
SDC4-201ENST00000372733 SLC25A48Q6ZT89 311 aaKnown RBP13.29□□□□□ -0.28
SDC4-201ENST00000372733 OR5B3Q8NH48 314 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 SARAFQ96BY9 339 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 MRPL20Q9BYC9 149 aaKnown RBP13.29□□□□□ -0.28
SDC4-201ENST00000372733 DKK4Q9UBT3 224 aa13.29□□□□□ -0.28
SDC4-201ENST00000372733 A0A1W2PN81 502 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 E7EUB6 86 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 PEX7O00628 323 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 COX7A2P2O60397 106 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 HINT1P49773 126 aaPredicted RBP13.28□□□□□ -0.28
SDC4-201ENST00000372733 GNG5P63218 68 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 Q56UQ5 140 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 RNASEKQ6P5S7 137 aaKnown RBP13.28□□□□□ -0.28
SDC4-201ENST00000372733 ZNF329Q86UD4 541 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 NUDT10Q8NFP7 164 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 NUDT11Q96G61 164 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 HARBI1Q96MB7 349 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 NCOR1P1Q9H4R4 102 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 RPUSD1Q9UJJ7 312 aaKnown RBP13.28□□□□□ -0.28
SDC4-201ENST00000372733 CORTO00230 105 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 PLAUP00749 431 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 WT1P19544 449 aaPredicted RBP13.28□□□□□ -0.28
SDC4-201ENST00000372733 EBLN2Q6P2I7 272 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 WIPF2Q8TF74 440 aaPredicted RBP13.28□□□□□ -0.28
SDC4-201ENST00000372733 FAM222BQ8WU58 562 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 ZNF714Q96N38 554 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 PAXXQ9BUH6 204 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 BET1LQ9NYM9 111 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 RNF7Q9UBF6 113 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 ARFGEF3Q5TH69 2177 aa13.28□□□□□ -0.28
SDC4-201ENST00000372733 FAM181BA6NEQ2 426 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 DLL1O00548 723 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 TSPOP30536 169 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 CAMPP49913 170 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 C10orf55Q5SWW7 151 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 KLHDC1Q8N7A1 406 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 SGK494Q96LW2 274 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 NAV3Q8IVL0 2385 aa13.27□□□□□ -0.28
SDC4-201ENST00000372733 M0R2Z0 102 aa13.27□□□□□ -0.29
SDC4-201ENST00000372733 REG1BP48304 166 aa13.27□□□□□ -0.29
SDC4-201ENST00000372733 TBR1Q16650 682 aa13.27□□□□□ -0.29
SDC4-201ENST00000372733 PATE2Q6UY27 113 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 ZNF841Q6ZN19 808 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 SEM1Q6ZVN7 128 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 KIR3DL3Q8N743 410 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 GRAMD2BQ96HH9 432 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 FNDC4Q9H6D8 234 aaPredicted RBP13.26□□□□□ -0.29
SDC4-201ENST00000372733 NDUFA4L2Q9NRX3 87 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 TNFRSF19Q9NS68 423 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 BOD1L1Q8NFC6 3051 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 HIGD1CA8MV81 97 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 C10orf113Q5VZT2 155 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 UNQ5815/PRO19632Q6UWF5 114 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 FAM231DQ6ZW35 169 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 SAP30LQ9HAJ7 183 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 PLCE1Q9P212 2302 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 VWC2LB2RUY7 222 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 GLRXP35754 106 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 TNFAIP6P98066 277 aaPredicted RBP13.26□□□□□ -0.29
SDC4-201ENST00000372733 SPATA12Q7Z6I5 190 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 NPIPB3Q92617 1050 aa13.26□□□□□ -0.29
SDC4-201ENST00000372733 ALKBH7Q9BT30 221 aaPredicted RBP13.26□□□□□ -0.29
SDC4-201ENST00000372733 MRPL36Q9P0J6 103 aaKnown RBP13.26□□□□□ -0.29
SDC4-201ENST00000372733 ATP5IP56385 69 aaPredicted RBP13.25□□□□□ -0.29
SDC4-201ENST00000372733 RASL11AQ6T310 242 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 LHFPL4Q7Z7J7 247 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 FAM169BQ8N8A8 192 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 CLEC5AQ9NY25 188 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 TP73-AS1Q9UF72 201 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 CBY1Q9Y3M2 126 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 WT1-ASQ06250 92 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 PMCHL1Q16048 86 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 ZNF788Q6ZQV5 615 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 CACNG8Q8WXS5 425 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 FXYD5Q96DB9 178 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 ZNF430Q9H8G1 570 aaPredicted RBP13.25□□□□□ -0.29
SDC4-201ENST00000372733 RPH3ALQ9UNE2 315 aa13.25□□□□□ -0.29
SDC4-201ENST00000372733 SH2D7A6NKC9 451 aaPredicted RBP13.24□□□□□ -0.29
SDC4-201ENST00000372733 IGHV1-46P01743 117 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 GATA4P43694 442 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms