RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 VDAC2P45880 294 aaPredicted RBP8.09□□□□□ -1.11
SS18-207ENST00000577636 DLX1P56177 255 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 KLRD1Q13241 179 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 HES1Q14469 280 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 SSX2Q16385 188 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 AKR1C8PQ5T2L2 129 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 DPPA3Q6W0C5 159 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 HSD17B13Q7Z5P4 300 aaPredicted RBP8.09□□□□□ -1.11
SS18-207ENST00000577636 THNSL2Q86YJ6 484 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 MALSU1Q96EH3 234 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 METTL1Q9UBP6 276 aaKnown RBP8.09□□□□□ -1.11
SS18-207ENST00000577636 FBXO7Q9Y3I1 522 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 UBE2L5PA0A1B0GUS4 154 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 A0A1W2PPI3 338 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 SMCO3A2RU48 225 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 C15orf62A8K5M9 175 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 RNASEK-C17orf49H0YIS7 233 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 OPN1MWP04001 364 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 SNRNP70P08621 437 aaKnown RBP8.08□□□□□ -1.12
SS18-207ENST00000577636 FAM106CPP0CH98 169 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 OPN1MW2P0DN77 364 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 OPN1MW3P0DN78 364 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 ATP6V0CP27449 155 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 DLK1P80370 383 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 SERF2P84101 59 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 ZNF616Q08AN1 781 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 RAB31Q13636 194 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 PSG5Q15238 335 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 MMDQ15546 238 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 TNXAQ16473 311 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 LRRC75BQ2VPJ9 315 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 TMEM182Q6ZP80 229 aaPredicted RBP8.08□□□□□ -1.12
SS18-207ENST00000577636 PPP1R27Q86WC6 154 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 CXorf58Q96LI9 332 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 PSMG3Q9BT73 122 aaPredicted RBP8.08□□□□□ -1.12
SS18-207ENST00000577636 KRTAP3-3Q9BYR6 98 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 KRTAP3-2Q9BYR7 98 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 C16orf95Q9H693 158 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 ZNF430Q9H8G1 570 aaPredicted RBP8.08□□□□□ -1.12
SS18-207ENST00000577636 PARP11Q9NR21 331 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 KCNIP2Q9NS61 270 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 TIMM9Q9Y5J7 89 aa8.08□□□□□ -1.12
SS18-207ENST00000577636 DSCAML1Q8TD84 2053 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 INS-IGF2F8WCM5 200 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 NPFFO15130 113 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 NBR2O15453 112 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 MPDU1O75352 247 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 CNIH1O95406 144 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 CA2P00918 260 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 IGKV1D-33P01593 117 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 IGKV1-33P01594 117 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 IGLV2-23P01705 113 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 MBP02144 154 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 FGF7P21781 194 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 RPL27AP46776 148 aaKnown RBP8.07□□□□□ -1.12
SS18-207ENST00000577636 GNB1P62873 340 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 PRSS8Q16651 343 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 OXLD1Q5BKU9 147 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 SAMD5Q5TGI4 173 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 HCP5Q6MZN7 132 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 IL34Q6ZMJ4 242 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 Q6ZRG5 221 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 LHFPL4Q7Z7J7 247 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 FAM213BQ8TBF2 198 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 MARC2Q969Z3 335 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 WDR61Q9GZS3 305 aaKnown RBP8.07□□□□□ -1.12
SS18-207ENST00000577636 SH3BGRL3Q9H299 93 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 HRH4Q9H3N8 390 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 NDUFA4L2Q9NRX3 87 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 SIGLEC9Q9Y336 463 aa8.07□□□□□ -1.12
SS18-207ENST00000577636 RRHO14718 337 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 ARL16Q0P5N6 197 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 HABP2Q14520 560 aaPredicted RBP8.06□□□□□ -1.12
SS18-207ENST00000577636 C2orf83Q53S99 150 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 PXDC1Q5TGL8 231 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 UQCC3Q6UW78 93 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 REC114Q7Z4M0 266 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 COMMD1Q8N668 190 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 LFNGQ8NES3 379 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 NPVFQ9HCQ7 196 aa8.06□□□□□ -1.12
SS18-207ENST00000577636 RAB19A4D1S5 217 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 MFSD2BA6NFX1 497 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 NCBP2LA6PVI3 153 aaKnown RBP8.05□□□□□ -1.12
SS18-207ENST00000577636 FNDC10F2Z333 226 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 I3L521 148 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 CYB5BO43169 146 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 HBE1P02100 147 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 FBP1P09467 338 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 H2AFB1P0C5Y9 115 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 OR13C7P0DN81 318 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 TMEM11P17152 192 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 SAA4P35542 130 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 RUNX1Q01196 453 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 AKR1C1Q04828 323 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 HNF4GQ14541 408 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 VWC2Q2TAL6 325 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 NSUN5P1Q3KNT7 163 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 ETFRF1Q6IPR1 90 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 BTNL8Q6UX41 500 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 HAPLN4Q86UW8 402 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms