RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SNAPC5O75971 98 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 MT-CO2P00403 227 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 NAT1P18440 290 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 TAS2R20P59543 309 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 LEMD1Q68G75 181 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 LYSMD2Q8IV50 215 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 OR5H2Q8NGV7 314 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 OR1P1Q8NH06 330 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 NXF2Q9GZY0 626 aaKnown RBP10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 PRNDQ9UKY0 176 aa10.1□□□□□ -0.79
SQSTM1-208ENST00000485412 GPR31O00270 319 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 CA1P00915 261 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 MED14OSP0DP75 135 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 HLA-DMAP28067 261 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 HRH1P35367 487 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 CMC4P56277 68 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 TCF24Q7RTU0 167 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 PINX1Q96BK5 328 aaKnown RBP10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 SEC22AQ96IW7 307 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 TMEM56Q96MV1 263 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 APLNQ9ULZ1 77 aa10.09□□□□□ -0.79
SQSTM1-208ENST00000485412 GIG44P09565 113 aaPredicted RBP10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 RPS19P39019 145 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 MFAP4P55083 255 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 RELQ04864 619 aaPredicted RBP10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 UBE2NLQ5JXB2 153 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 TMEM69Q5SWH9 247 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 TOMM20LQ6UXN7 152 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 TBC1D26Q86UD7 250 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 CADM3Q8N126 398 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 SAMD12Q8N8I0 201 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 TSPAN14Q8NG11 270 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 MRGPRFQ96AM1 343 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 ZFAND3Q9H8U3 227 aa10.08□□□□□ -0.8
SQSTM1-208ENST00000485412 A0A087WXM4 84 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 TRAV14DV4A0A0A6YYC5 116 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 A0A1B0GU03 582 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 C11orf94C9JXX5 98 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 DFFBO76075 338 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 EIF4EP06730 217 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 SMIM18P0DKX4 95 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 TAS2R46P59540 309 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 DEFB131AP59861 70 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 LSM3P62310 102 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 PRCDQ00LT1 54 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 CMTM1Q8IZ96 169 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 ZNF114Q8NC26 417 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 OR6F1Q8NGZ6 308 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 BORCS5Q969J3 196 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 S100A16Q96FQ6 103 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 MRPS26Q9BYN8 205 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 MS4A6AQ9H2W1 248 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 VSIRQ9H7M9 311 aa10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 MRPL36Q9P0J6 103 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-208ENST00000485412 ST8SIA3O43173 380 aa10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 GNG7O60262 68 aa10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 TMEM187Q14656 261 aa10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 Q8NAQ8 132 aa10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 CMTM3Q96MX0 182 aa10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 FKBP11Q9NYL4 201 aa10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 PUS1Q9Y606 427 aaKnown RBP eCLIP10.06□□□□□ -0.8
SQSTM1-208ENST00000485412 A0A1B0GVY2 172 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 RBMY1A1P0DJD3 496 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 RBMY1CP0DJD4 496 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 C4BPBP20851 252 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 PRSS3P35030 304 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 RPL5P46777 297 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 RBMY1FQ15415 496 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 H2BFWTQ7Z2G1 175 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 CENPSQ8N2Z9 138 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 OR4A16Q8NH70 328 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 GPX8Q8TED1 209 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 TSC22D3Q99576 134 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 TXN2Q99757 166 aa10.05□□□□□ -0.8
SQSTM1-208ENST00000485412 IGKV1-5P01602 117 aa10.04□□□□□ -0.8
SQSTM1-208ENST00000485412 PI3P19957 117 aa10.04□□□□□ -0.8
SQSTM1-208ENST00000485412 HSPE1P61604 102 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-208ENST00000485412 SNX29P2Q8IUI4 249 aa10.04□□□□□ -0.8
SQSTM1-208ENST00000485412 NDUFA13Q9P0J0 144 aa10.04□□□□□ -0.8
SQSTM1-208ENST00000485412 ABCA13Q86UQ4 5058 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 A0A0B4J293 547 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 IGHV4-28A0A0C4DH34 117 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 PRSS29PA6NIE9 313 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 KNCNA6PVL3 124 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 M0QYG6 137 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 P0C879 139 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 ALDH3B2P48448 385 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 PPP5CP53041 499 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 RPL11P62913 178 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 PAFAH1B2P68402 229 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 MLANAQ16655 118 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 RNASE12Q5GAN4 147 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 YIPF6Q96EC8 236 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 HRH4Q9H3N8 390 aa10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 FNDC4Q9H6D8 234 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-208ENST00000485412 IGHV4-4A0A075B6R2 117 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 ELOA3CA0A087WX78 387 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 TRAV10A0A0B4J240 114 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 A0A0G2JRQ6 117 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 DNASE2O00115 360 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms