RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ARPC1AQ92747 370 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 RASL11BQ9BPW5 248 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 NPCDR1Q9BY65 106 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 FBXO7Q9Y3I1 522 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 F11RQ9Y624 299 aaKnown RBP11.19□□□□□ -0.62
SS18-201ENST00000269137 SOX21Q9Y651 276 aaPredicted RBP11.19□□□□□ -0.62
SS18-201ENST00000269137 AKAP9Q99996 3911 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 SMCO3A2RU48 225 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 REG1AP05451 166 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 AKR1C8PQ5T2L2 129 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 PXDC1Q5TGL8 231 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 DPPA3Q6W0C5 159 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 C9orf139Q6ZV77 190 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 CIARTQ8N365 385 aaPredicted RBP11.18□□□□□ -0.62
SS18-201ENST00000269137 ZNF709Q8N972 641 aa11.18□□□□□ -0.62
SS18-201ENST00000269137 NOTCH2Q04721 2471 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 ZNF469Q96JG9 3925 aaPredicted RBP11.17□□□□□ -0.62
SS18-201ENST00000269137 IGHV7-81A0A0B4J1V7 117 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 NUDT19A8MXV4 375 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 C17orf112F2Z3M2 114 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 CORTO00230 105 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 SOX15O60248 233 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 PRH1P02810 166 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 CTRB1P17538 263 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 MFAP2P55001 183 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 CTRB2Q6GPI1 263 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 Q6ZRG5 221 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 TMEM144Q7Z5S9 345 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 BPIFCQ8NFQ6 507 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 LYPD6BQ8NI32 183 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 ABHD5Q8WTS1 349 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 SLC25A33Q9BSK2 321 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 MOB4Q9Y3A3 225 aa11.17□□□□□ -0.62
SS18-201ENST00000269137 A6NDX4 124 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 TSPAN9O75954 239 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 CRYGCP07315 174 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 APELAP0DMC3 54 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 CAMLGP49069 296 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 FHITP49789 147 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 NDPQ00604 133 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 GAMTQ14353 236 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 TEPPQ6URK8 271 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 SLC16A13Q7RTY0 426 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 C5orf56Q8N8D9 126 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 OR1L6Q8NGR2 347 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 NPIPB5A8MRT5 1133 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 AKR1C1Q04828 323 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 RAB31Q13636 194 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 MGST2Q99735 147 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 FNDC4Q9H6D8 234 aaPredicted RBP11.16□□□□□ -0.62
SS18-201ENST00000269137 PITPNC1Q9UKF7 332 aa11.16□□□□□ -0.62
SS18-201ENST00000269137 MYO9AB2RTY4 2548 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 H3BUX3 64 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 MBP02144 154 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 EGR2P11161 476 aaPredicted RBP11.15□□□□□ -0.62
SS18-201ENST00000269137 OPRK1P41145 380 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 MLANAQ16655 118 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 ETFRF1Q6IPR1 90 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 C16orf82Q7Z2V1 217 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 TMEM219Q86XT9 240 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 TTC9CQ8N5M4 171 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 TEX29Q8N6K0 151 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 FAM213BQ8TBF2 198 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 SLC35E1Q96K37 410 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 FAM103A1Q9BTL3 118 aaKnown RBP11.15□□□□□ -0.62
SS18-201ENST00000269137 GGTLC1Q9BX51 225 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 WNT10AQ9GZT5 417 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 KCNIP2Q9NS61 270 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 RPRMQ9NS64 109 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 DMRT1Q9Y5R6 373 aa11.15□□□□□ -0.62
SS18-201ENST00000269137 M0QZK8 103 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 AMY1AP04745 511 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 DEFB112Q30KQ8 113 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 TMEM41BQ5BJD5 291 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 ASPHD1Q5U4P2 390 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 IL34Q6ZMJ4 242 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 BCL6BQ8N143 479 aaPredicted RBP11.14□□□□□ -0.63
SS18-201ENST00000269137 HSPB9Q9BQS6 159 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 MXRA5Q9NR99 2828 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 AGPAT2O15120 278 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 ZNF616Q08AN1 781 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 ACSM6Q6P461 480 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 C19orf35Q6ZS72 473 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 OR2T6Q8NHC8 308 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 SGMS2Q8NHU3 365 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 MISP3Q96FF7 219 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 HRH4Q9H3N8 390 aa11.14□□□□□ -0.63
SS18-201ENST00000269137 ACANP16112 2415 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 IGKV1OR2-108A0A075B7D4 117 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 SMAD7O15105 426 aaKnown RBP11.13□□□□□ -0.63
SS18-201ENST00000269137 APOC3P02656 99 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 DEFA4P12838 97 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 RPL29P47914 159 aaKnown RBP11.13□□□□□ -0.63
SS18-201ENST00000269137 FFAR4Q5NUL3 377 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 TMEM68Q96MH6 324 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 PRDM13Q9H4Q3 707 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 VSIRQ9H7M9 311 aa11.13□□□□□ -0.63
SS18-201ENST00000269137 MDFIC2A0A1B0GVS7 189 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 TMEM218A2RU14 115 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 H2AFB1P0C5Y9 115 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms