RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 DEFB134Q4QY38 66 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 TMEM97Q5BJF2 176 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 C9orf135Q5VTT2 229 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 ZNF776Q68DI1 518 aaPredicted RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 SLC25A34Q6PIV7 304 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 C12orf54Q6X4T0 127 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 MMD2Q8IY49 270 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 FAM58AQ8N1B3 248 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 SLC39A11Q8N1S5 342 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 TPRX1Q8N7U7 411 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 BCORP1Q8N888 145 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 CCDC71LQ8N9Z2 235 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 OR5D13Q8NGL4 314 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 OR1F12Q8NHA8 337 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 FLVCR1-AS1Q8TAF5 88 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 RLN3Q8WXF3 142 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 TAF15Q92804 592 aaKnown RBP eCLIP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 BADQ92934 168 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 APOBEC3DQ96AK3 386 aaPredicted RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 C10orf35Q96D05 121 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 TM4SF19Q96DZ7 209 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 GRAMD2BQ96HH9 432 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 COX14Q96I36 57 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 VSTM2LQ96N03 204 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 SPAG8Q99932 426 aaPredicted RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 SRSF8Q9BRL6 282 aaKnown RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 STRADBQ9C0K7 418 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 TXNIPQ9H3M7 391 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 UBTD1Q9HAC8 227 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 NECAP2Q9NVZ3 263 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 CLCF1Q9UBD9 225 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 BOKQ9UMX3 212 aaPredicted RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 PTRH2Q9Y3E5 179 aaKnown RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 OR2W1Q9Y3N9 320 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 YTHDF2Q9Y5A9 579 aaKnown RBP2.59□□□□□ -1.99
CSDE1-216ENST00000534389 TIMM9Q9Y5J7 89 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 HILPDAQ9Y5L2 63 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 LINC00312Q9Y6C7 94 aa2.59□□□□□ -1.99
CSDE1-216ENST00000534389 SCN3AQ9NY46 2000 aa2.59□□□□□ -2
CSDE1-216ENST00000534389 MPDZO75970 2070 aa2.59□□□□□ -2
CSDE1-216ENST00000534389 SHANK1Q9Y566 2161 aa2.59□□□□□ -2
CSDE1-216ENST00000534389 IGKV1-27A0A075B6S5 117 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 LOC102723996A0A087X1L8 192 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 TRBV9A0A0B4J1U6 114 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IGKV1-6A0A0C4DH72 117 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IGKV1-12A0A0C4DH73 117 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 A0A0G2JLM5 398 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 ZNF816-ZNF321PA0A0X1KG74 233 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 UBE2L5PA0A1B0GUS4 154 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 A0A1W2PPM0 123 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 A0A1W2PQF6 199 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 OR4C46A6NHA9 309 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 ZNF716A6NP11 495 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 ANKRD30BLA7E2S9 258 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 C15orf62A8K5M9 175 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 PMS2P5A8MQ11 134 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 ZNF850A8MQ14 1090 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 H0YIG0 161 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 SNAI2O43623 268 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 ANGPTL7O43827 346 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 CLDN1O95832 211 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IGKV1-5P01602 117 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IGKV1D-12P01611 117 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IGLV3-1P01715 115 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 MT-ATP8P03928 68 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IFI6P09912 130 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 PNMTP11086 282 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 HNRNPA2B1P22626 353 aaKnown RBP2.58□□□□□ -2
CSDE1-216ENST00000534389 CCNOP22674 350 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 S100GP29377 79 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 IL12BP29460 328 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 OTX2P32243 289 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 CFHR2P36980 270 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 GUCA1AP43080 201 aaPredicted RBP2.58□□□□□ -2
CSDE1-216ENST00000534389 GPR1P46091 355 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 REG1BP48304 166 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 CYB561P49447 251 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 POLR2LP62875 67 aaKnown RBP2.58□□□□□ -2
CSDE1-216ENST00000534389 SEC11AP67812 179 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 SLC35B1P78383 322 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 CX3CL1P78423 397 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 HIST1H1AQ02539 215 aaPredicted RBP2.58□□□□□ -2
CSDE1-216ENST00000534389 TGFBR3Q03167 851 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 SLC38A11Q08AI6 406 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 KISS1Q15726 138 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 GABRA6Q16445 453 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 RSPO1Q2MKA7 263 aaPredicted RBP2.58□□□□□ -2
CSDE1-216ENST00000534389 HNRNPA1L2Q32P51 320 aaKnown RBP2.58□□□□□ -2
CSDE1-216ENST00000534389 MS4A18Q3C1V0 323 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 GCSAMLQ5JQS6 135 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 SLC25A47Q6Q0C1 308 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 Q6ZR03 302 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 Q6ZS49 121 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 GTF2H5Q6ZYL4 71 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 TMEM25Q86YD3 366 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 ZNF695Q8IW36 515 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 BOD1L2Q8IYS8 172 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 SPEM1Q8N4L4 309 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 OR10G3Q8NGC4 313 aa2.58□□□□□ -2
CSDE1-216ENST00000534389 OR10G9Q8NGN4 311 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms