RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 LHFPL4Q7Z7J7 247 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 CLRN3Q8NCR9 226 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 RAB24Q969Q5 203 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 SIRPDQ9H106 197 aa15.23■□□□□ 0.03
USP39-202ENST00000409025 DCHS2Q6V1P9 2916 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 A0A1W2PRD5 423 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 A0A1W2PRF3 423 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 A0A1W2PRM7 423 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 DNASE2O00115 360 aaPredicted RBP15.22■□□□□ 0.03
USP39-202ENST00000409025 VENTXO95231 258 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 RPL27AP46776 148 aaKnown RBP15.22■□□□□ 0.03
USP39-202ENST00000409025 PMS2P11Q13670 270 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 SOHLH1Q5JUK2 328 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 MIC13Q5XKP0 118 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 TMEM144Q7Z5S9 345 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 PPP1R27Q86WC6 154 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 CFAP46Q8IYW2 2715 aa15.22■□□□□ 0.03
USP39-202ENST00000409025 SEC14L6B5MCN3 397 aa15.21■□□□□ 0.03
USP39-202ENST00000409025 HMGB3O15347 200 aaKnown RBP15.21■□□□□ 0.03
USP39-202ENST00000409025 EIF3GO75821 320 aaKnown RBP eCLIP15.21■□□□□ 0.03
USP39-202ENST00000409025 HOXB4P17483 251 aaPredicted RBP15.21■□□□□ 0.03
USP39-202ENST00000409025 CD69Q07108 199 aa15.21■□□□□ 0.03
USP39-202ENST00000409025 RBMS3Q6XE24 437 aaKnown RBP15.21■□□□□ 0.03
USP39-202ENST00000409025 CACNG8Q8WXS5 425 aa15.21■□□□□ 0.03
USP39-202ENST00000409025 FOXH1O75593 365 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 YIF1AO95070 293 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 GPX4P36969 197 aaPredicted RBP15.21■□□□□ 0.02
USP39-202ENST00000409025 LGALS4P56470 323 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 MINOS1Q5TGZ0 78 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 RNASEH2CQ8TDP1 164 aaKnown RBP15.21■□□□□ 0.02
USP39-202ENST00000409025 SSMEM1Q8WWF3 244 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 CFHR4Q92496 578 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 PIMREGQ9BSJ6 248 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 FBXL15Q9H469 300 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 MINOS1-NBL1R4GNA1 71 aa15.21■□□□□ 0.02
USP39-202ENST00000409025 EPG5Q9HCE0 2579 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 A0A1W2PPV4 95 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 FAM74A7A6NL05 159 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 OOSP1A8MZH6 123 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 NUPL2O15504 423 aaKnown RBP15.2■□□□□ 0.02
USP39-202ENST00000409025 TOX4O94842 621 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 RPL29P47914 159 aaKnown RBP15.2■□□□□ 0.02
USP39-202ENST00000409025 COMPP49747 757 aaPredicted RBP15.2■□□□□ 0.02
USP39-202ENST00000409025 B2MP61769 119 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 GAMTQ14353 236 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 HABP2Q14520 560 aaPredicted RBP15.2■□□□□ 0.02
USP39-202ENST00000409025 PLGLAQ15195 96 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 FAM74A3Q4VXF1 159 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 GCSAMLQ5JQS6 135 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 CCDC144NLQ6NUI1 221 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 FAM168AQ92567 244 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 P2RX4Q99571 388 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 VAX2Q9UIW0 290 aa15.2■□□□□ 0.02
USP39-202ENST00000409025 GNB1P62873 340 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 STPG3Q8N7X2 389 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 SLC35E1Q96K37 410 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 IGLC7A0M8Q6 106 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 MOSP00540 346 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 FBP1P09467 338 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 CEBPGP53567 150 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 SSX2Q16385 188 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 SLC16A13Q7RTY0 426 aa15.19■□□□□ 0.02
USP39-202ENST00000409025 MMDQ15546 238 aa15.18■□□□□ 0.02
USP39-202ENST00000409025 MLANAQ16655 118 aa15.18■□□□□ 0.02
USP39-202ENST00000409025 CYB561D1Q8N8Q1 229 aa15.18■□□□□ 0.02
USP39-202ENST00000409025 TMPRSS5Q9H3S3 457 aa15.18■□□□□ 0.02
USP39-202ENST00000409025 NDUFS8O00217 210 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 NBR2O15453 112 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 REG1AP05451 166 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 DEFA4P12838 97 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 TAGLN2P37802 199 aaKnown RBP15.17■□□□□ 0.02
USP39-202ENST00000409025 IQCF2Q8IXL9 164 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 MANBALQ9NQG1 85 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 SLC45A2Q9UMX9 530 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 M0R036 132 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 TSPAN4O14817 238 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 SNRNP70P08621 437 aaKnown RBP15.17■□□□□ 0.02
USP39-202ENST00000409025 PSMB3P49720 205 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 ATP5J2P56134 94 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 PRR20EP86478 221 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 PRR20CP86479 221 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 PRR20DP86480 221 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 PRR20BP86481 221 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 PRR20AP86496 221 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 SLC35E3Q7Z769 313 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 ZNF114Q8NC26 417 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 TBX15Q96SF7 602 aa15.17■□□□□ 0.02
USP39-202ENST00000409025 TBL2Q9Y4P3 447 aaKnown RBP15.17■□□□□ 0.02
USP39-202ENST00000409025 UBE2E1P51965 193 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 HES1Q14469 280 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 TMEM249Q2WGJ8 235 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 AKIRIN2Q53H80 203 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 TMEM88Q6PEY1 159 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 CLEC2AQ6UVW9 174 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 NPBQ8NG41 125 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 OR2T10Q8NGZ9 312 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 C10orf105Q8TEF2 133 aa15.16■□□□□ 0.02
USP39-202ENST00000409025 EAF1Q96JC9 268 aaPredicted RBP15.16■□□□□ 0.02
USP39-202ENST00000409025 POLR3KQ9Y2Y1 108 aaPredicted RBP15.16■□□□□ 0.02
USP39-202ENST00000409025 DOPEY1Q5JWR5 2465 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms