RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CT45A7P0DMV0 189 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 OR5H8P0DN80 308 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 CELP19835 753 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 HTR2CP28335 458 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 BTCP35070 178 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 SLURP1P55000 103 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 DLK1P80370 383 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 SSBP2P81877 361 aaPredicted RBP5.18□□□□□ -1.58
VPS53-213ENST00000572334 FABP9Q0Z7S8 132 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 UNC119Q13432 240 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 HAGHQ16775 308 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 GLT8D1Q68CQ7 371 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 C6orf201Q7Z4U5 140 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 LRRTM1Q86UE6 522 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 PUSL1Q8N0Z8 303 aaKnown RBP5.18□□□□□ -1.58
VPS53-213ENST00000572334 RXFP4Q8TDU9 374 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 FAM46BQ96A09 425 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 RRNAD1Q96FB5 475 aaKnown RBP5.18□□□□□ -1.58
VPS53-213ENST00000572334 AGMATQ9BSE5 352 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 NICN1Q9BSH3 213 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 TMED9Q9BVK6 235 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 TM2D1Q9BX74 207 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 PARP11Q9NR21 331 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 GAB2Q9UQC2 676 aa5.18□□□□□ -1.58
VPS53-213ENST00000572334 IGHV4OR15-8A0A075B7B6 117 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 A0A087WW49 117 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 FOXI3A8MTJ6 420 aaPredicted RBP5.17□□□□□ -1.58
VPS53-213ENST00000572334 H0YJW9 148 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 MFNGO00587 321 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 OVOL1O14753 267 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 ARPC1BO15143 372 aaKnown RBP5.17□□□□□ -1.58
VPS53-213ENST00000572334 TCAPO15273 167 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 RBBP9O75884 186 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 SPDEFO95238 335 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 MBP02144 154 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 LINC00614P0C842 121 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 GPX4P36969 197 aaPredicted RBP5.17□□□□□ -1.58
VPS53-213ENST00000572334 CEACAM6P40199 344 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 INSL3P51460 131 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 LINC00205P59089 165 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 CX3CL1P78423 397 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 NHLH2Q02577 135 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 PJVKQ0ZLH3 352 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 RPL39P5Q59GN2 51 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 C1orf100Q5SVJ3 147 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 CASC10Q5T4H9 136 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 FAM71F2Q6NXP2 309 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 ACSM6Q6P461 480 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 SLC16A13Q7RTY0 426 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 Q8N1Y9 231 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 OR2AK2Q8NG84 335 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 OR5AN1Q8NGI8 311 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 MAFIPQ8WZ33 124 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 GFI1Q99684 422 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 CMSS1Q9BQ75 279 aaKnown RBP5.17□□□□□ -1.58
VPS53-213ENST00000572334 FAAP24Q9BTP7 215 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 ZNF471Q9BX82 626 aaPredicted RBP5.17□□□□□ -1.58
VPS53-213ENST00000572334 FBXL15Q9H469 300 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 HRASLSQ9HDD0 168 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 UQCC1Q9NVA1 299 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 CKLFQ9UBR5 152 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 SMAD5-AS1Q9Y6J3 95 aa5.17□□□□□ -1.58
VPS53-213ENST00000572334 TRBV6-6A0A0A6YYG2 114 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 IGKV1-6A0A0C4DH72 117 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 A0A1W2PN81 502 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ANKRD20A5PA0PJZ0 165 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 C9orf170A2RU37 121 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 TMEM14DPA8MWL7 114 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 LINC01619G3V211 115 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ITGB1BP1O14713 200 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 RRHO14718 337 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 LGALS1P09382 135 aaKnown RBP5.16□□□□□ -1.58
VPS53-213ENST00000572334 FRMD6-AS1P0C7T7 363 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 AKAIN1P0CW23 69 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 GP9P14770 177 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 HIST1H1BP16401 226 aaKnown RBP5.16□□□□□ -1.58
VPS53-213ENST00000572334 CHRNA7P36544 502 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 TMEM50BP56557 158 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 TAS2R19P59542 299 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 GAGE1Q13065 139 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ECSCRQ19T08 205 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 MRGPRG-AS1Q2M3A8 158 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ACSM3Q53FZ2 586 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 SAPCD1Q5SSQ6 148 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 TMEM91Q6ZNR0 172 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 HAPLN4Q86UW8 402 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ZNF429Q86V71 674 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 NKAIN3Q8N8D7 197 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 OR56B1Q8NGI3 324 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 MUC7Q8TAX7 377 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ARPC1AQ92747 370 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 GALMQ96C23 342 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ABHD14BQ96IU4 210 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 RHOVQ96L33 236 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 RCHY1Q96PM5 261 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 ABHD1Q96SE0 405 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 HDHD3Q9BSH5 251 aaPredicted RBP5.16□□□□□ -1.58
VPS53-213ENST00000572334 FAM103A1Q9BTL3 118 aaKnown RBP5.16□□□□□ -1.58
VPS53-213ENST00000572334 PBDC1Q9BVG4 233 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 GGACTQ9BVM4 153 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms