RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DGCR14Q96DF8 476 aaKnown RBP8.15□□□□□ -1.1
VPS39-208ENST00000564994 WDR89Q96FK6 387 aaPredicted RBP8.15□□□□□ -1.1
VPS39-208ENST00000564994 CXorf58Q96LI9 332 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 CMTM3Q96MX0 182 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 SRSF8Q9BRL6 282 aaKnown RBP8.15□□□□□ -1.1
VPS39-208ENST00000564994 QTRT1Q9BXR0 403 aaKnown RBP8.15□□□□□ -1.1
VPS39-208ENST00000564994 NAA50Q9GZZ1 169 aaKnown RBP8.15□□□□□ -1.1
VPS39-208ENST00000564994 TUBA4BQ9H853 241 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 MLXQ9UH92 298 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 NSG2Q9Y328 171 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 TRBV7-1A0A0A6YYK4 115 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 ZNF320A2RRD8 509 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 DBX1A6NMT0 343 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 KRASP01116 189 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 SERPINE2P07093 398 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 TRAPPC2P0DI81 140 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 TRAPPC2BP0DI82 140 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 OR13C7P0DN81 318 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 PTBP1P26599 531 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS39-208ENST00000564994 GPR183P32249 361 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 G6PCP35575 357 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 MFAP2P55001 183 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 ERVK-16P61578 105 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 GUCA2BQ16661 112 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 PHLDA2Q53GA4 152 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 TM4SF20Q53R12 229 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 CMTM1Q8IZ96 169 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 TMEM61Q8N0U2 210 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 DEFB125Q8N687 156 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 GDPD1Q8N9F7 314 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 SPATA25Q9BR10 227 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 RETNQ9HD89 108 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 NDUFA4L2Q9NRX3 87 aa8.14□□□□□ -1.11
VPS39-208ENST00000564994 TECRQ9NZ01 308 aaKnown RBP8.14□□□□□ -1.11
VPS39-208ENST00000564994 IGHV3-35A0A0C4DH35 117 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 SMIM31A0A1B0GVY4 71 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 RBMY1BA6NDE4 496 aaKnown RBP8.13□□□□□ -1.11
VPS39-208ENST00000564994 RBMY1EA6NEQ0 496 aaKnown RBP8.13□□□□□ -1.11
VPS39-208ENST00000564994 TPPPO94811 219 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 RBMY1DP0C7P1 496 aaKnown RBP8.13□□□□□ -1.11
VPS39-208ENST00000564994 LYL1P12980 280 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 CTF1Q16619 201 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 FAM106AQ4KMX7 169 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 THOC7Q6I9Y2 204 aaKnown RBP8.13□□□□□ -1.11
VPS39-208ENST00000564994 TBC1D26Q86UD7 250 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 CADM3Q8N126 398 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 UXS1Q8NBZ7 420 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 OR1L8Q8NGR8 309 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 HINT2Q9BX68 163 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 SCPEP1Q9HB40 452 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 SLC2A8Q9NY64 477 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 OR51B2Q9Y5P1 312 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 CEPT1Q9Y6K0 416 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 HYDINQ4G0P3 5121 aa8.13□□□□□ -1.11
VPS39-208ENST00000564994 IGHV3-21A0A0B4J1V1 117 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 OR11H12B2RN74 326 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 F8W735 103 aaPredicted RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 M0QYG6 137 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 TGOLN2O43493 480 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 GABARAPO95166 117 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 IGKV1-39P01597 117 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 IGKV1D-39P04432 117 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 C8orf88P0DMB2 117 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 RCVRNP35243 200 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 RORCP51449 518 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 TSPAN5P62079 268 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 RNASE12Q5GAN4 147 aaKnown RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 ZNF57Q68EA5 555 aaPredicted RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 ZFAND6Q6FIF0 208 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 SLC25A24Q6NUK1 477 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 PLET1Q6UQ28 207 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 BTNL8Q6UX41 500 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 HSD17B13Q7Z5P4 300 aaPredicted RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 VN1R17PQ8TDU5 208 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 LSM10Q969L4 123 aaKnown RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 ZNF436Q9C0F3 470 aaPredicted RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 HIPK2Q9H2X6 1198 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 SRD5A3Q9H8P0 318 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 TMEM14BQ9NUH8 114 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 GAR1Q9NY12 217 aaKnown RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 THYN1Q9P016 225 aa8.12□□□□□ -1.11
VPS39-208ENST00000564994 F11RQ9Y624 299 aaKnown RBP8.12□□□□□ -1.11
VPS39-208ENST00000564994 OR2T8A6NH00 312 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 C15orf61A6NNL5 157 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 K7EIM0 57 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 SNAPC5O75971 98 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 SCAF4O95104 1147 aaKnown RBP8.11□□□□□ -1.11
VPS39-208ENST00000564994 UCP3P55916 312 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 LPCAT3Q6P1A2 487 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 SCARB1Q8WTV0 552 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 ISOC1Q96CN7 298 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 ZNF414Q96IQ9 312 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 SEC22AQ96IW7 307 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 FAM110AQ9BQ89 295 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 FAM212BQ9NTI7 297 aaPredicted RBP8.11□□□□□ -1.11
VPS39-208ENST00000564994 KLK11Q9UBX7 282 aa8.11□□□□□ -1.11
VPS39-208ENST00000564994 EPPK1P58107 5090 aaKnown RBP8.1□□□□□ -1.11
VPS39-208ENST00000564994 FAM25AB3EWG3 89 aa8.1□□□□□ -1.11
VPS39-208ENST00000564994 FAM25CB3EWG5 89 aa8.1□□□□□ -1.11
VPS39-208ENST00000564994 FAM25GB3EWG6 89 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms