RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TRAPPC2BP0DI82 140 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 AREGP15514 252 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 F2RP25116 425 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 APOC4P55056 127 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 BRWD1-AS2P59051 145 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 FXYD4P59646 89 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 OR2B8PP59922 312 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 KCTD21Q4G0X4 260 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 AADACL3Q5VUY0 350 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 OR2C3Q8N628 320 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 DEFB125Q8N687 156 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 UXS1Q8NBZ7 420 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 OR1L8Q8NGR8 309 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 OR6F1Q8NGZ6 308 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 BSCL2Q96G97 398 aaPredicted RBP5.33□□□□□ -1.56
VPS41-208ENST00000448833 TSC22D3Q99576 134 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 C5orf66Q9H5L9 145 aa5.33□□□□□ -1.56
VPS41-208ENST00000448833 RBMY1BA6NDE4 496 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 RBMY1EA6NEQ0 496 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 MARCH11A6NNE9 402 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 E7EUB6 86 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 K7EMT4 169 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 TNFSF12O43508 249 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 HLA-AP01891 365 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 CD5P06127 495 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 CD7P09564 240 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 RBMY1DP0C7P1 496 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 C8orf88P0DMB2 117 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 GNRHRP30968 328 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 PRSS3P35030 304 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 NEDD8Q15843 81 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 UBE2NLQ5JXB2 153 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 TMEM69Q5SWH9 247 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 SLC25A24Q6NUK1 477 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 ADAMTSL5Q6ZMM2 481 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 ZNF818PQ6ZRF7 136 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 TMEM61Q8N0U2 210 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 GVQW1Q8N7I0 195 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 GDPD1Q8N9F7 314 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 OR5H6Q8NGV6 325 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 OR5H2Q8NGV7 314 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 OR5B3Q8NH48 314 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 OR51H1Q8NH63 302 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 ZNF502Q8TBZ5 544 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 LSM10Q969L4 123 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 DGCR14Q96DF8 476 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 SLC25A38Q96DW6 304 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 WDR89Q96FK6 387 aaPredicted RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 CCDC140Q96MF4 163 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 CMTM3Q96MX0 182 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 SPAG8Q99932 426 aaPredicted RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 FAM110AQ9BQ89 295 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 GGTLC1Q9BX51 225 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 KRTAP9-2Q9BYQ4 174 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 C6orf62Q9GZU0 229 aaPredicted RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 DAZ1Q9NQZ3 744 aaKnown RBP5.32□□□□□ -1.56
VPS41-208ENST00000448833 TMEM140Q9NV12 185 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 EHFQ9NZC4 300 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 PRNDQ9UKY0 176 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 TP53TG1Q9Y2A0 90 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 CSMD3Q7Z407 3707 aa5.32□□□□□ -1.56
VPS41-208ENST00000448833 KIR2DL5BA0A0G2JN68 375 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 KIR2DL5BA0A0G2JPC4 375 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TEX50A0A1B0GTY4 177 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 IGLC7A0M8Q6 106 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TMEM213A2RRL7 107 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 OR4C46A6NHA9 309 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 GPR31O00270 319 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 NDUFA4O00483 81 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TSPAN4O14817 238 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TGOLN2O43493 480 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 PGLYRP1O75594 196 aaPredicted RBP5.31□□□□□ -1.56
VPS41-208ENST00000448833 IGHV3-23P01764 117 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 REG1AP05451 166 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 OR13C7P0DN81 318 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 NAT1P18440 290 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 GPR183P32249 361 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 BMI1P35226 326 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TSPAN5P62079 268 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 RELQ04864 619 aaPredicted RBP5.31□□□□□ -1.56
VPS41-208ENST00000448833 ZNF585BQ52M93 769 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 Q6ZWC4 215 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TMEM17Q86X19 198 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 KIR2DL5AQ8N109 375 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TMEM217Q8N7C4 229 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 KIR2DL5BQ8NHK3 375 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 MOB3AQ96BX8 217 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 TXN2Q99757 166 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 ZNF2Q9BSG1 426 aaPredicted RBP5.31□□□□□ -1.56
VPS41-208ENST00000448833 ZNF436Q9C0F3 470 aaPredicted RBP5.31□□□□□ -1.56
VPS41-208ENST00000448833 NDUFA4L2Q9NRX3 87 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 MLXQ9UH92 298 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 OR51B2Q9Y5P1 312 aa5.31□□□□□ -1.56
VPS41-208ENST00000448833 LYSTQ99698 3801 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 A0A087WXM4 84 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 KRTAP9-6A0A140TA67 174 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 A0A1B0GW64 132 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 MFSD2BA6NFX1 497 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 CGB1A6NKQ9 187 aa5.3□□□□□ -1.56
VPS41-208ENST00000448833 C15orf62A8K5M9 175 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms