RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 C20orf24Q9BUV8 137 aa9.34□□□□□ -0.91
VPS29-211ENST00000553128 CELA1Q9UNI1 258 aa9.34□□□□□ -0.91
VPS29-211ENST00000553128 ETV7Q9Y603 341 aa9.34□□□□□ -0.91
VPS29-211ENST00000553128 IGKV1D-8A0A087WSZ0 117 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 ATP8B1O43520 1251 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 IGLV2-14P01704 120 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 AMBPP02760 352 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 CD1AP06126 327 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 GIG44P09565 113 aaPredicted RBP9.33□□□□□ -0.92
VPS29-211ENST00000553128 P0DMU3 169 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 FAM231AP0DMU4 169 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 FAM231CP0DMU5 169 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 CRHBPP24387 322 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 MAPK3P27361 379 aaPredicted RBP9.33□□□□□ -0.92
VPS29-211ENST00000553128 TAS2R43P59537 309 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 TTC23Q5W5X9 447 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 KCTD9Q7L273 389 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 H1FOOQ8IZA3 346 aaPredicted RBP9.33□□□□□ -0.92
VPS29-211ENST00000553128 GBGT1Q8N5D6 347 aa9.33□□□□□ -0.92
VPS29-211ENST00000553128 IGHV3-49A0A0A0MS15 119 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 IGHV3-21A0A0B4J1V1 117 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 C15orf61A6NNL5 157 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 C16orf90A8MZG2 172 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 PTBP1P26599 531 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS29-211ENST00000553128 MAS1LP35410 378 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 CLDN12P56749 244 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 LEMD1Q68G75 181 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 Q8N1X5 172 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 PHYHIPQ92561 330 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 GPHA2Q96T91 129 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 GINS4Q9BRT9 223 aa9.32□□□□□ -0.92
VPS29-211ENST00000553128 DEFB131BA0A096LNP1 70 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 IGLC7A0M8Q6 106 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 IRGMA1A4Y4 181 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 F8W735 103 aaPredicted RBP9.31□□□□□ -0.92
VPS29-211ENST00000553128 NDUFA4O00483 81 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 CHEK1O14757 476 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 CDK1P06493 297 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 OR2B8PP59922 312 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 RPL8P62917 257 aaKnown RBP9.31□□□□□ -0.92
VPS29-211ENST00000553128 ST3GAL4Q11206 333 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 IRF3Q14653 427 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 C12orf74Q32Q52 190 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 SMPXQ9UHP9 88 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 RBMX2Q9Y388 322 aaKnown RBP9.31□□□□□ -0.92
VPS29-211ENST00000553128 X6R8D5 127 aa9.31□□□□□ -0.92
VPS29-211ENST00000553128 IGHV3OR16-13A0A075B7E8 117 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 IGHV3-74A0A0B4J1X5 117 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 TRAV3A0A0B4J244 114 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 IGKV1D-13A0A0B4J2D9 117 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 EFCAB10A6NFE3 127 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 K7EMT4 169 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 DIRAS3O95661 229 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 IGKV1-13P0DP09 117 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 HLA-GP17693 338 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 EIF4EBP1Q13541 118 aaPredicted RBP9.3□□□□□ -0.92
VPS29-211ENST00000553128 Q6ZRM9 215 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 FAM24BQ8N5W8 94 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 VSTM2AQ8TAG5 236 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 RHPN1-AS1Q9BWJ2 59 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 SCRT2Q9NQ03 307 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 PRELID3BQ9Y3B1 194 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 FAT1Q14517 4588 aa9.3□□□□□ -0.92
VPS29-211ENST00000553128 IGHV7-4-1A0A0J9YVY3 117 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 SLC17A2O00624 439 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 MRPS14O60783 128 aaKnown RBP9.29□□□□□ -0.92
VPS29-211ENST00000553128 GNB3P16520 340 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 WNT4P56705 351 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 TNP2Q05952 138 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 HSD17B12Q53GQ0 312 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 FAM90A2PQ658T7 463 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 OR10W1Q8NGF6 305 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 OR56B1Q8NGI3 324 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 OR4S2Q8NH73 311 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 VN1R17PQ8TDU5 208 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 TCTEX1D2Q8WW35 142 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 BSCL2Q96G97 398 aaPredicted RBP9.29□□□□□ -0.92
VPS29-211ENST00000553128 NDUFAF3Q9BU61 184 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 PLGRKTQ9HBL7 147 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 ELF5Q9UKW6 265 aaPredicted RBP9.29□□□□□ -0.92
VPS29-211ENST00000553128 SPATA2Q9UM82 520 aa9.29□□□□□ -0.92
VPS29-211ENST00000553128 MRPS7Q9Y2R9 242 aaKnown RBP9.29□□□□□ -0.92
VPS29-211ENST00000553128 A0A075B6Q4 140 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 C15orf62A8K5M9 175 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 ZNF705EA8MWA4 302 aaPredicted RBP9.28□□□□□ -0.92
VPS29-211ENST00000553128 CD74P04233 296 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 UCHL1P09936 223 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 MIFP14174 115 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 C4BPBP20851 252 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 NFYAP23511 347 aaPredicted RBP9.28□□□□□ -0.92
VPS29-211ENST00000553128 DEFB131AP59861 70 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 MRPS15P82914 257 aaKnown RBP9.28□□□□□ -0.92
VPS29-211ENST00000553128 C2orf76Q3KRA6 126 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 TMEM116Q8NCL8 245 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 GIMAP1Q8WWP7 306 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 C9orf16Q9BUW7 83 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 AK6Q9Y3D8 172 aaKnown RBP9.28□□□□□ -0.92
VPS29-211ENST00000553128 MYCBP2O75592 4640 aa9.28□□□□□ -0.92
VPS29-211ENST00000553128 TMEM272A0A1B0GTI8 110 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 MYL12BO14950 172 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms