RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 EAF1Q96JC9 268 aaPredicted RBP16.86■□□□□ 0.29
VPS28-208ENST00000527797 ZNF471Q9BX82 626 aaPredicted RBP16.86■□□□□ 0.29
VPS28-208ENST00000527797 COMMD5Q9GZQ3 224 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 HIPK2Q9H2X6 1198 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 ENY2Q9NPA8 101 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 TEX50A0A1B0GTY4 177 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 CD24P25063 80 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 HOXA1P49639 335 aaPredicted RBP16.85■□□□□ 0.29
VPS28-208ENST00000527797 EBI3Q14213 229 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 BRD3OSQ6XYD6 125 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 STX12Q86Y82 276 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 ZNF430Q9H8G1 570 aaPredicted RBP16.85■□□□□ 0.29
VPS28-208ENST00000527797 METTL1Q9UBP6 276 aaKnown RBP16.85■□□□□ 0.29
VPS28-208ENST00000527797 FBXL17Q9UF56 701 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 SIGLEC9Q9Y336 463 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 APCP25054 2843 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 FAM106CPP0CH98 169 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 MYOD1P15172 320 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 SULT1A1P50225 295 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 MMDQ15546 238 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 THNSL2Q86YJ6 484 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 MMD2Q8IY49 270 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 BSCL2Q96G97 398 aaPredicted RBP16.85■□□□□ 0.29
VPS28-208ENST00000527797 HINT2Q9BX68 163 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 SMIM3Q9BZL3 60 aa16.85■□□□□ 0.29
VPS28-208ENST00000527797 HEYLQ9NQ87 328 aaPredicted RBP16.85■□□□□ 0.29
VPS28-208ENST00000527797 STRAPQ9Y3F4 350 aaKnown RBP16.85■□□□□ 0.29
VPS28-208ENST00000527797 RRHO14718 337 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 CST7O76096 145 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 OPN1MWP04001 364 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 OPN1MW2P0DN77 364 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 OPN1MW3P0DN78 364 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 VDAC2P45880 294 aaPredicted RBP16.84■□□□□ 0.29
VPS28-208ENST00000527797 RPP30P78346 268 aaKnown RBP16.84■□□□□ 0.29
VPS28-208ENST00000527797 PRCDQ00LT1 54 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 KLF17Q5JT82 389 aaPredicted RBP16.84■□□□□ 0.29
VPS28-208ENST00000527797 TEX261Q6UWH6 196 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 NPBQ8NG41 125 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 OR1L8Q8NGR8 309 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 CYTL1Q9NRR1 136 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 TPSG1Q9NRR2 321 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 KIAA1456Q9P272 454 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 U3KQ87 197 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 WNK2Q9Y3S1 2297 aa16.84■□□□□ 0.29
VPS28-208ENST00000527797 RGS13O14921 159 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 NBR2O15453 112 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 F2RL1P55085 397 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 UBA52P62987 128 aaKnown RBP16.83■□□□□ 0.28
VPS28-208ENST00000527797 TMEM267Q0VDI3 215 aaPredicted RBP16.83■□□□□ 0.28
VPS28-208ENST00000527797 PLGLAQ15195 96 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 PRSS8Q16651 343 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 PPP1R27Q86WC6 154 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 FBXL15Q9H469 300 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 PLEKHA3Q9HB20 300 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 PAIP2BQ9ULR5 123 aaKnown RBP16.83■□□□□ 0.28
VPS28-208ENST00000527797 FAM96BQ9Y3D0 163 aa16.83■□□□□ 0.28
VPS28-208ENST00000527797 A0A0U1RQK1 487 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 TMEM11P17152 192 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 MAS1LP35410 378 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 MRGPRG-AS1Q2M3A8 158 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 TMEM14EPQ6UXP3 125 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 OR4C12Q96R67 309 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 ITGB1BP2Q9UKP3 347 aa16.82■□□□□ 0.28
VPS28-208ENST00000527797 ACTL6BO94805 426 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 NDUFA3O95167 84 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 METTL15P1P0C7V9 234 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 BPIFB3P59826 476 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 PJVKQ0ZLH3 352 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 FAM120AOSQ5T036 256 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 Q8N6K4 173 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 TMEM217Q8N7C4 229 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 ST8SIA2Q92186 375 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 MEGF9Q9H1U4 602 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 NDUFA4L2Q9NRX3 87 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 IFNA10P01566 189 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 IFNA7P01567 189 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 EIF5AP63241 154 aaKnown RBP16.81■□□□□ 0.28
VPS28-208ENST00000527797 ZNF767PQ75MW2 155 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 ZNF680Q8NEM1 530 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 OR1S2Q8NGQ3 325 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 OR5C1Q8NGR4 320 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 STOML3Q8TAV4 291 aa16.81■□□□□ 0.28
VPS28-208ENST00000527797 BORCS7-ASMTA0A0B4J1R7 106 aa16.8■□□□□ 0.28
VPS28-208ENST00000527797 JTBO76095 146 aa16.8■□□□□ 0.28
VPS28-208ENST00000527797 CFDP00746 253 aaPredicted RBP16.8■□□□□ 0.28
VPS28-208ENST00000527797 TPT1P13693 172 aaKnown RBP16.8■□□□□ 0.28
VPS28-208ENST00000527797 DYNLT3P51808 116 aa16.8■□□□□ 0.28
VPS28-208ENST00000527797 TNXAQ16473 311 aa16.8■□□□□ 0.28
VPS28-208ENST00000527797 RPL7L1Q6DKI1 246 aaKnown RBP16.8■□□□□ 0.28
VPS28-208ENST00000527797 CIARTQ8N365 385 aaPredicted RBP16.8■□□□□ 0.28
VPS28-208ENST00000527797 WFDC1Q9HC57 220 aa16.8■□□□□ 0.28
VPS28-208ENST00000527797 A0A1W2PN81 502 aa16.79■□□□□ 0.28
VPS28-208ENST00000527797 NCBP2LA6PVI3 153 aaKnown RBP16.79■□□□□ 0.28
VPS28-208ENST00000527797 SMAD7O15105 426 aaKnown RBP16.79■□□□□ 0.28
VPS28-208ENST00000527797 CHRNA7P36544 502 aa16.79■□□□□ 0.28
VPS28-208ENST00000527797 HBG1P69891 147 aa16.79■□□□□ 0.28
VPS28-208ENST00000527797 HBG2P69892 147 aa16.79■□□□□ 0.28
VPS28-208ENST00000527797 CLINT1Q14677 625 aa16.79■□□□□ 0.28
VPS28-208ENST00000527797 FBLN7Q53RD9 439 aa16.79■□□□□ 0.28
VPS28-208ENST00000527797 C1RLQ9NZP8 487 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms