RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 C4orf3Q8WVX3 66 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 TCTEX1D2Q8WW35 142 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 UBE2E2Q96LR5 201 aa12.3□□□□□ -0.44
CLN3-201ENST00000333496 I3L521 148 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 SAA1P0DJI8 122 aaPredicted RBP12.29□□□□□ -0.44
CLN3-201ENST00000333496 GNRHRP30968 328 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 TAS2R19P59542 299 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 GNB1P62873 340 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 VMA21Q3ZAQ7 101 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 ASPHD1Q5U4P2 390 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 ZBTB34Q8NCN2 500 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 MOB3AQ96BX8 217 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 ZNF2Q9BSG1 426 aaPredicted RBP12.29□□□□□ -0.44
CLN3-201ENST00000333496 GPN1Q9HCN4 374 aaPredicted RBP12.29□□□□□ -0.44
CLN3-201ENST00000333496 CNIH1O95406 144 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 IL5P05113 134 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 AKAIN1P0CW23 69 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 PRSS8Q16651 343 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 PDLIM3Q53GG5 364 aaPredicted RBP12.29□□□□□ -0.44
CLN3-201ENST00000333496 STEAP1BQ6NZ63 245 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 VKORC1L1Q8N0U8 176 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 OR4C16Q8NGL9 310 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 OR5M8Q8NGP6 311 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 OR4S2Q8NH73 311 aa12.29□□□□□ -0.44
CLN3-201ENST00000333496 RCC1LQ96I51 464 aaKnown RBP12.29□□□□□ -0.44
CLN3-201ENST00000333496 ZNF436Q9C0F3 470 aaPredicted RBP12.29□□□□□ -0.44
CLN3-201ENST00000333496 SNRPGP15A8MWD9 76 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 RAMP3O60896 148 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 NDUFB6O95139 128 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 CD3DP04234 171 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 CXCL3P19876 107 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 C4BPBP20851 252 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 HERV-K104P61576 105 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 RUNX1Q01196 453 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 FHL3Q13643 280 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 FAAP20Q6NZ36 180 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 OR5B12Q96R08 314 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 FXYD6Q9H0Q3 95 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 ZNF430Q9H8G1 570 aaPredicted RBP12.28□□□□□ -0.44
CLN3-201ENST00000333496 VSIG4Q9Y279 399 aa12.28□□□□□ -0.44
CLN3-201ENST00000333496 CREBL2O60519 120 aaPredicted RBP12.27□□□□□ -0.44
CLN3-201ENST00000333496 PRB2P02812 416 aaPredicted RBP12.27□□□□□ -0.44
CLN3-201ENST00000333496 CD74P04233 296 aa12.27□□□□□ -0.44
CLN3-201ENST00000333496 RBMS2Q15434 407 aaKnown RBP12.27□□□□□ -0.44
CLN3-201ENST00000333496 TNXAQ16473 311 aa12.27□□□□□ -0.44
CLN3-201ENST00000333496 OR5T1Q8NG75 326 aa12.27□□□□□ -0.44
CLN3-201ENST00000333496 OR11H1Q8NG94 326 aa12.27□□□□□ -0.44
CLN3-201ENST00000333496 OR4D10Q8NGI6 311 aa12.27□□□□□ -0.44
CLN3-201ENST00000333496 MS4A10Q96PG2 267 aa12.27□□□□□ -0.44
CLN3-201ENST00000333496 RAB3DO95716 219 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 SPAG16Q8N0X2 631 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 PUSL1Q8N0Z8 303 aaKnown RBP12.26□□□□□ -0.45
CLN3-201ENST00000333496 SRSF12Q8WXF0 261 aaKnown RBP12.26□□□□□ -0.45
CLN3-201ENST00000333496 ALX4Q9H161 411 aaPredicted RBP12.26□□□□□ -0.45
CLN3-201ENST00000333496 MSGN1A6NI15 193 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 KBTBD11O94819 623 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 GIPP09681 153 aaPredicted RBP12.26□□□□□ -0.45
CLN3-201ENST00000333496 APELAP0DMC3 54 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 KIR2DS2P43631 304 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 OR51H1Q8NH63 302 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 RHOVQ96L33 236 aa12.26□□□□□ -0.45
CLN3-201ENST00000333496 M0QYG6 137 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 RBFOX2O43251 390 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLN3-201ENST00000333496 PGLYRP1O75594 196 aaPredicted RBP12.25□□□□□ -0.45
CLN3-201ENST00000333496 OR2A4O95047 310 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 DUS4LO95620 317 aaKnown RBP12.25□□□□□ -0.45
CLN3-201ENST00000333496 TBPP20226 339 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 TPPP2P59282 170 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 TSPAN5P62079 268 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 DHODHQ02127 395 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 CATR1Q13166 79 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 MEF2DQ14814 521 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 C10orf55Q5SWW7 151 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 TEX261Q6UWH6 196 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 MMD2Q8IY49 270 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 TMEM167AQ8TBQ9 72 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 TMEM68Q96MH6 324 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 OR2A7Q96R45 310 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 TINAGL1Q9GZM7 467 aaPredicted RBP12.25□□□□□ -0.45
CLN3-201ENST00000333496 U3KQ87 197 aa12.25□□□□□ -0.45
CLN3-201ENST00000333496 E7EUB6 86 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 HRASP01112 189 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 IFNA7P01567 189 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 TRGV3P03979 118 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 RNASE10Q5GAN6 216 aaKnown RBP12.24□□□□□ -0.45
CLN3-201ENST00000333496 VAX1Q5SQQ9 334 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 AADACL3Q5VUY0 350 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 SSX9Q7RTT3 188 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 OR11H4Q8NGC9 324 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 OR51S1Q8NGJ8 323 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 OR1N2Q8NGR9 330 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 OR2T35Q8NGX2 323 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 ASB13Q8WXK3 278 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 MGAT4CQ9UBM8 478 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 FLVCR2Q9UPI3 526 aa12.24□□□□□ -0.45
CLN3-201ENST00000333496 H3BUA1 57 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 TSC22D2O75157 780 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 HPRT1P00492 218 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 IGHV3-11P01762 117 aa12.23□□□□□ -0.45
CLN3-201ENST00000333496 RLN1P04808 185 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms