RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 IZUMO1RA6ND01 250 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 CGB1A6NKQ9 187 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 FAM223BA6NKX1 122 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 TMEM127O75204 238 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 ZNF735P0CB33 412 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 IGHV4-30-4P0DP06 118 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 AREGP15514 252 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 RPL27AP46776 148 aaKnown RBP8.23□□□□□ -1.09
VPS39-208ENST00000564994 FXYD4P59646 89 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 LSM3P62310 102 aaKnown RBP8.23□□□□□ -1.09
VPS39-208ENST00000564994 ATP5G2Q06055 141 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 MSMO1Q15800 293 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 RPEL1Q2QD12 228 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 ADAMTSL5Q6ZMM2 481 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 SSX9Q7RTT3 188 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 FAM223AQ8IWN6 122 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 NECAP1Q8NC96 275 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 OR5AP2Q8NGF4 316 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 VSTM2AQ8TAG5 236 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 RCHY1Q96PM5 261 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 FYTTD1Q96QD9 318 aaKnown RBP8.23□□□□□ -1.09
VPS39-208ENST00000564994 THAP7Q9BT49 309 aaPredicted RBP8.23□□□□□ -1.09
VPS39-208ENST00000564994 SLC5A7Q9GZV3 580 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 C19orf73Q9NVV2 129 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 SIGLEC8Q9NYZ4 499 aa8.23□□□□□ -1.09
VPS39-208ENST00000564994 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.22□□□□□ -1.09
VPS39-208ENST00000564994 NPIPB5A8MRT5 1133 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 PPP5D1E7EU14 171 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 SULT1C2O00338 296 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 XRCC3O43542 346 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 AIREO43918 545 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 NDUFB8O95169 186 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 HRASP01112 189 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 EDN2P20800 178 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 MECP2P51608 486 aaKnown RBP8.22□□□□□ -1.09
VPS39-208ENST00000564994 C15orf32Q32M92 178 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 TIMM50Q3ZCQ8 353 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 OR4A47Q6IF82 309 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 ZNF818PQ6ZRF7 136 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 SPAG16Q8N0X2 631 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 ZBTB34Q8NCN2 500 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 GIMAP1Q8WWP7 306 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 FANCD2OSQ96PS1 177 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 SLC2A9Q9NRM0 540 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 ANAPC10Q9UM13 185 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 ZNF257Q9Y2Q1 563 aa8.22□□□□□ -1.09
VPS39-208ENST00000564994 TRAV3A0A0B4J244 114 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 A8MZ25 164 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 H0Y980 276 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 RBFOX2O43251 390 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS39-208ENST00000564994 IGHV3-23P01764 117 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 HLA-AP01891 365 aaKnown RBP8.21□□□□□ -1.1
VPS39-208ENST00000564994 CRYGCP07315 174 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 CTRB1P17538 263 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 PSMB6P28072 239 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 GNRHRP30968 328 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 MAS1LP35410 378 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 KIR2DS2P43631 304 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 CBX5P45973 191 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 TAS2R20P59543 309 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 RPL8P62917 257 aaKnown RBP8.21□□□□□ -1.1
VPS39-208ENST00000564994 TATDN3Q17R31 274 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 KLK9Q2XQG4 91 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 UBE2NLQ5JXB2 153 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 CTRB2Q6GPI1 263 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 SLC25A42Q86VD7 318 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 TMEM17Q86X19 198 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 CROCCP3Q8IVE0 287 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 SAMD12Q8N8I0 201 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 TSPAN14Q8NG11 270 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 S100A16Q96FQ6 103 aaKnown RBP8.21□□□□□ -1.1
VPS39-208ENST00000564994 TM2D3Q9BRN9 247 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 BET1LQ9NYM9 111 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 FBXL7Q9UJT9 491 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 KLK9Q9UKQ9 250 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 S4R3C0 116 aa8.21□□□□□ -1.1
VPS39-208ENST00000564994 A0A087WXM4 84 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 DPPA5A6NC42 116 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 REG1AP05451 166 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 HLA-GP17693 338 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 RFX2P48378 723 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 TAS2R31P59538 309 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 OR2B8PP59922 312 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 POU2AF1Q16633 256 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 TMEM69Q5SWH9 247 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 SGPP2Q8IWX5 399 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 OR51H1Q8NH63 302 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 OR4A5Q8NH83 315 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 CCDC140Q96MF4 163 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 IFT46Q9NQC8 304 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 EHFQ9NZC4 300 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 PEMTQ9UBM1 199 aa8.2□□□□□ -1.1
VPS39-208ENST00000564994 IGLV11-55A0A075B6I3 123 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 IGLC7A0M8Q6 106 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 C3orf84H3BNL1 204 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 UPK2O00526 184 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 S1PR2O95136 353 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 OR2C1O95371 312 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 TNFAIP8O95379 198 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 HPRT1P00492 218 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms