RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 GCNT2Q8N0V5 402 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 TPRX1Q8N7U7 411 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 RFESDQ8TAC1 157 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 TXNDC17Q9BRA2 123 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 TUBG2Q9NRH3 451 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 METRNQ9UJH8 293 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 TRAV38-1A0A0B4J264 116 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 C15orf65H3BRN8 121 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 TFF1P04155 84 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 CD82P27701 267 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 DUTP33316 252 aaKnown RBP16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 FAM214BQ7L5A3 538 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 GBGT1Q8N5D6 347 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 OR5T1Q8NG75 326 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 FAM216AQ8WUB2 273 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 DEFB108AA8MXU0 73 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 TCAPO15273 167 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 TIMM8AO60220 97 aaPredicted RBP16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 HPRT1P00492 218 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 CRYAAP02489 173 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 KITLGP21583 273 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 IL3RAP26951 378 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 HOXC12P31275 282 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 OPRK1P41145 380 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 ATP5G3P48201 142 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 CNN1P51911 297 aaKnown RBP16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 GCSAMLQ5JQS6 135 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 FAM78BQ5VT40 261 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 CST9LP1Q5W188 147 aa16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 MRPL41Q8IXM3 137 aaKnown RBP16.73■□□□□ 0.27
SYNGAP1-227ENST00000638142 CACNA1DQ01668 2161 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 LNP1A1A4G5 178 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 GPR12P47775 334 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 EDDM3BP56851 147 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 TMEM144Q7Z5S9 345 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 NDUFB4O95168 129 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 UBE2G2P60604 165 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 PRAMEF5Q5TYX0 476 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 OR52E5Q8NH55 327 aa16.72■□□□□ 0.27
SYNGAP1-227ENST00000638142 RPL15P61313 204 aaKnown RBP16.71■□□□□ 0.27
SYNGAP1-227ENST00000638142 FOXL1Q12952 345 aa16.71■□□□□ 0.27
SYNGAP1-227ENST00000638142 FCGR3BO75015 233 aa16.71■□□□□ 0.26
SYNGAP1-227ENST00000638142 OR4A16Q8NH70 328 aa16.71■□□□□ 0.26
SYNGAP1-227ENST00000638142 PTPRBP23467 1997 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 EREGO14944 169 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 OR4A8P0C604 315 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 EGR1P18146 543 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 TMPRSS3P57727 454 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 GUSBP1Q15486 140 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 PDLIM3Q53GG5 364 aaPredicted RBP16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 TREML4Q6UXN2 200 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 RBFOX2O43251 390 aaKnown RBP eCLIP16.7■□□□□ 0.268e-7■■■■□ 24.2
SYNGAP1-227ENST00000638142 PROP1O75360 226 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 PRSS8Q16651 343 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 CD177Q8N6Q3 437 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 C1orf162Q8NEQ5 155 aaPredicted RBP16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 DERL1Q9BUN8 251 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 CHODLQ9H9P2 273 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 JPT1Q9UK76 154 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 ZDBF2Q9HCK1 2354 aa16.7■□□□□ 0.26
SYNGAP1-227ENST00000638142 A0A0U1RQK1 487 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 ZNF320A2RRD8 509 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 GALR2O43603 387 aaPredicted RBP16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 AGFG2O95081 481 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 STAG3L2P0CL84 134 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 STAG3L3P0CL85 134 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 CD59P13987 128 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 ZNF718Q3SXZ3 478 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 TRIB1Q96RU8 372 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 DCTN5Q9BTE1 182 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 MSL2Q9HCI7 577 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 HEYLQ9NQ87 328 aaPredicted RBP16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 VDAC2P45880 294 aaPredicted RBP16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 ERVK-16P61578 105 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 SFRP2Q96HF1 295 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 PATZ1Q9HBE1 687 aaKnown RBP16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 FKBP11Q9NYL4 201 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 GNG12Q9UBI6 72 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 TRAPPC1Q9Y5R8 145 aa16.69■□□□□ 0.26
SYNGAP1-227ENST00000638142 PRSS46E5RG02 174 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 CXorf1O96002 111 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 C1QTNF9P0C862 333 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 ARL14EPLP0DKL9 152 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 BMP5P22003 454 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 PRDX2P32119 198 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 ERVFC1-1P60608 527 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 MZT1Q08AG7 82 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 EDDM3AQ14507 147 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 MORN2Q502X0 79 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 ATP1A1-AS1Q5TC04 95 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 LRRC29Q8WV35 223 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 GGTLC1Q9BX51 225 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 PXMP4Q9Y6I8 212 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 IGHG3P01860 377 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 GCH1P30793 250 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 FABP6P51161 128 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 LTC4SQ16873 150 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 C1orf194Q5T5A4 169 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 CNEP1R1Q8N9A8 125 aa16.68■□□□□ 0.26
SYNGAP1-227ENST00000638142 MGST2Q99735 147 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms