RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SRSF10O75494 262 aaKnown RBP8.64□□□□□ -1.03
VPS39-214ENST00000614932 AGFG2O95081 481 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 CELA2AP08217 269 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 ADH4P08319 380 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 TGFBR3Q03167 851 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 MEF2CQ06413 473 aaPredicted RBP8.64□□□□□ -1.03
VPS39-214ENST00000614932 GTF3C1Q12789 2109 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 GABRA6Q16445 453 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 TBR1Q16650 682 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 PHLDA2Q53GA4 152 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 EMC4Q5J8M3 183 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 CXorf66Q5JRM2 361 aaPredicted RBP8.64□□□□□ -1.03
VPS39-214ENST00000614932 BOD1L2Q8IYS8 172 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 OR5D14Q8NGL3 314 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 TSKUQ8WUA8 353 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 PERPQ96FX8 193 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 EMC6Q9BV81 110 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 OR10A2Q9H208 303 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 PRO3102Q9H379 93 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 BOKQ9UMX3 212 aaPredicted RBP8.64□□□□□ -1.03
VPS39-214ENST00000614932 HLA-DRB1P01911 266 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 CDCP2Q5VXM1 449 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 SPATA31B1PQ5VZV4 182 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 SCCPDHQ8NBX0 429 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 TMEM45BQ96B21 275 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 C1orf147Q96MC9 270 aaPredicted RBP8.63□□□□□ -1.03
VPS39-214ENST00000614932 SFXN3Q9BWM7 321 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 METTL7AQ9H8H3 244 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 TMEM140Q9NV12 185 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 MED29Q9NX70 200 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 NCOR1O75376 2440 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 IGHV5-10-1A0A0J9YXX1 117 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 H3BRM9 83 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 SIVA1O15304 175 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 VDAC1P21796 283 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 PPOXP50336 477 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 ANKRD37Q7Z713 158 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 OR8B3Q8NGG8 313 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 CT55Q8WUE5 264 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 OR8B2Q96RD0 313 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 DUSP23Q9BVJ7 150 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 GNB1LQ9BYB4 327 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 PNRC2Q9NPJ4 139 aaKnown RBP8.63□□□□□ -1.03
VPS39-214ENST00000614932 KCNIP1Q9NZI2 227 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 KLRF1Q9NZS2 232 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 ADAMTS9Q9P2N4 1935 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 GPR179Q6PRD1 2367 aa8.63□□□□□ -1.03
VPS39-214ENST00000614932 A0A1W2PP11 408 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.62□□□□□ -1.03
VPS39-214ENST00000614932 H3BUT2 72 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 FREM3P0C091 2139 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 CTLA4P16410 223 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 AESQ08117 197 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 WDR74Q6RFH5 385 aaPredicted RBP8.62□□□□□ -1.03
VPS39-214ENST00000614932 FAM57BQ71RH2 274 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 OR10AG1Q8NH19 301 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 SPSB4Q96A44 273 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 ADAT3Q96EY9 351 aaPredicted RBP8.62□□□□□ -1.03
VPS39-214ENST00000614932 CITED1Q99966 193 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 STRADBQ9C0K7 418 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 TRAPPC2LQ9UL33 140 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 TRAV36DV7A0A075B6V5 113 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 LY6G6EA0A0G2JKS1 128 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 SLC22A20A6NK97 555 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 CHST1O43916 411 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 NPPCP23582 126 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 CRYBB3P26998 211 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 UBE2G1P62253 170 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 FOXI2Q6ZQN5 318 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 FA2HQ7L5A8 372 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 OR51T1Q8NGJ9 327 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 OR10G8Q8NGN5 311 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 GATAD1Q8WUU5 269 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 SPACA5Q96QH8 159 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 LIME1Q9H400 295 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 IL36BQ9NZH7 164 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 NXT1Q9UKK6 140 aaKnown RBP8.62□□□□□ -1.03
VPS39-214ENST00000614932 U3KQA8 63 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 DEGS1O15121 323 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 MT-ND6P03923 174 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 CELA3AP09093 270 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 SLC25A6P12236 298 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 GAGE5Q13069 117 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 GAGE6Q13070 117 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 RHBDD2Q6NTF9 364 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 ZNF841Q6ZN19 808 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 SPATA12Q7Z6I5 190 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 VSTM2AQ8TAG5 236 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 ZNF418Q8TF45 676 aaPredicted RBP8.62□□□□□ -1.03
VPS39-214ENST00000614932 CLDN23Q96B33 292 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 GALMQ96C23 342 aa8.62□□□□□ -1.03
VPS39-214ENST00000614932 COA3Q9Y2R0 106 aaPredicted RBP8.62□□□□□ -1.03
VPS39-214ENST00000614932 A0A087X0K7 114 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 IGKV1D-43A0A0B4J1Z2 117 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 FAM181BA6NEQ2 426 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 FAM87AP0C7U9 286 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 BLVRBP30043 206 aaPredicted RBP8.61□□□□□ -1.03
VPS39-214ENST00000614932 GPR183P32249 361 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 SSTR5P35346 364 aa8.61□□□□□ -1.03
VPS39-214ENST00000614932 LGALS4P56470 323 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms