RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 OR4C13Q8NGP0 309 aa17■□□□□ 0.31
VPS28-208ENST00000527797 REG4Q9BYZ8 158 aa17■□□□□ 0.31
VPS28-208ENST00000527797 MAGT1Q9H0U3 335 aa17■□□□□ 0.31
VPS28-208ENST00000527797 TMEM140Q9NV12 185 aa17■□□□□ 0.31
VPS28-208ENST00000527797 NSG2Q9Y328 171 aa17■□□□□ 0.31
VPS28-208ENST00000527797 MINOS1-NBL1R4GNA1 71 aa17■□□□□ 0.31
VPS28-208ENST00000527797 RNF223E7ERA6 249 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 OR2F2O95006 317 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 PVALBP20472 110 aaPredicted RBP16.99■□□□□ 0.31
VPS28-208ENST00000527797 AP2S1P53680 142 aaPredicted RBP16.99■□□□□ 0.31
VPS28-208ENST00000527797 OR2F1Q13607 317 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 LDLRAD2Q5SZI1 272 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 ACOT7LQ6ZUV0 252 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 LHFPL4Q7Z7J7 247 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 LINC01356Q8N9X3 169 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 TRAV20A0A0B4J274 112 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 A0A0D9SG52 128 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 FAM90A26D6RGX4 464 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 RBMXL2O75526 392 aaKnown RBP16.99■□□□□ 0.31
VPS28-208ENST00000527797 OR9G9P0C7N8 305 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 RPS16P62249 146 aaKnown RBP16.99■□□□□ 0.31
VPS28-208ENST00000527797 OR4A16Q8NH70 328 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 RBMXL1Q96E39 390 aaKnown RBP16.99■□□□□ 0.31
VPS28-208ENST00000527797 HARBI1Q96MB7 349 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 TBL2Q9Y4P3 447 aaKnown RBP16.99■□□□□ 0.31
VPS28-208ENST00000527797 HILPDAQ9Y5L2 63 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 AUP1Q9Y679 476 aa16.99■□□□□ 0.31
VPS28-208ENST00000527797 IGHV3-72A0A0B4J1Y9 119 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 RNF222A6NCQ9 220 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 OOSP1A8MZH6 123 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 SSSCA1O60232 199 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 VAMP2P63027 116 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 ZNF345Q14585 488 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 OR4A47Q6IF82 309 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 TMUB2Q71RG4 321 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 OR8H3Q8N146 312 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 Q96MF0 132 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 PTPN13Q12923 2485 aa16.98■□□□□ 0.31
VPS28-208ENST00000527797 CRYBG3Q68DQ2 2970 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 A0A1W2PPI3 338 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 SRRM4A7MD48 611 aaKnown RBP16.97■□□□□ 0.31
VPS28-208ENST00000527797 KCNAB3O43448 404 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 CHST1O43916 411 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 GATA3P23771 443 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 S100A11P31949 105 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 MS4A7Q9GZW8 240 aaPredicted RBP16.97■□□□□ 0.31
VPS28-208ENST00000527797 ARL6Q9H0F7 186 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 HIF1ANQ9NWT6 349 aa16.97■□□□□ 0.31
VPS28-208ENST00000527797 SYNGR2O43760 224 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 TSC22D2O75157 780 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 MED6O75586 246 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 P2RY1P47900 373 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 RELBQ01201 579 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 OPCMLQ14982 345 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 CCDC144NLQ6NUI1 221 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 KRTAP1-3Q8IUG1 177 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 KCNRGQ8N5I3 272 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 AQP10Q96PS8 301 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 C7orf69Q9H7B7 122 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 HSPB7Q9UBY9 170 aa16.96■□□□□ 0.31
VPS28-208ENST00000527797 LGALS7P47929 136 aa16.96■□□□□ 0.3
VPS28-208ENST00000527797 TNFRSF9Q07011 255 aa16.96■□□□□ 0.3
VPS28-208ENST00000527797 RAB40CQ96S21 281 aa16.96■□□□□ 0.3
VPS28-208ENST00000527797 QTRT1Q9BXR0 403 aaKnown RBP16.96■□□□□ 0.3
VPS28-208ENST00000527797 C11orf1Q9H5F2 150 aa16.96■□□□□ 0.3
VPS28-208ENST00000527797 ZC4H2Q9NQZ6 224 aa16.96■□□□□ 0.3
VPS28-208ENST00000527797 CACFD1Q9UGQ2 172 aa16.96■□□□□ 0.3
VPS28-208ENST00000527797 TRAV3A0A0B4J244 114 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 CENPVL3A0A0U1RRI6 287 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 TIMM23O14925 209 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 IL6RP08887 468 aaPredicted RBP16.95■□□□□ 0.3
VPS28-208ENST00000527797 SAA1P0DJI8 122 aaPredicted RBP16.95■□□□□ 0.3
VPS28-208ENST00000527797 HKR1P10072 659 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 CD1BP29016 333 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 RPL12P30050 165 aaKnown RBP16.95■□□□□ 0.3
VPS28-208ENST00000527797 OR2B8PP59922 312 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 UBE2KP61086 200 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 SSX2Q16385 188 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 AARDQ4LEZ3 155 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 VSTM2AQ8TAG5 236 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 MALSU1Q96EH3 234 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 BET1LQ9NYM9 111 aa16.95■□□□□ 0.3
VPS28-208ENST00000527797 MSGN1A6NI15 193 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 UPK2O00526 184 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 NPFFO15130 113 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 TACC2O95359 2948 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 VMA21Q3ZAQ7 101 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 PUSL1Q8N0Z8 303 aaKnown RBP16.94■□□□□ 0.3
VPS28-208ENST00000527797 MAPK1IP1LQ8NDC0 245 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 GON7Q9BXV9 100 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 RBKSQ9H477 322 aa16.94■□□□□ 0.3
VPS28-208ENST00000527797 GPR137BO60478 399 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 RPL23AP62750 156 aaKnown RBP16.93■□□□□ 0.3
VPS28-208ENST00000527797 GPR157Q5UAW9 335 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 ZNF429Q86V71 674 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 OR2C3Q8N628 320 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 OR52E5Q8NH55 327 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 OR4A5Q8NH83 315 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 RNF5Q99942 180 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 PRNDQ9UKY0 176 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms