RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 LY6G6FQ5SQ64 297 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 SLC25A2Q9BXI2 301 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 RABAC1Q9UI14 185 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 ZNF716A6NP11 495 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 K7EP13 123 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 HOXA3O43365 443 aaPredicted RBP11.44□□□□□ -0.58
USP40-208ENST00000450966 SPATA46Q5T0L3 261 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 OR1K1Q8NGR3 316 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 RAB1CQ92928 201 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 NGFP01138 241 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 PSG2P11465 335 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 ADCYAP1P18509 176 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 CXorf66Q5JRM2 361 aaPredicted RBP11.44□□□□□ -0.58
USP40-208ENST00000450966 IGHV5-10-1A0A0J9YXX1 117 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 IZUMO1RA6ND01 250 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 ALG1L2C9J202 215 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 F5H697 171 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 PPP1CAP62136 330 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 ASB10Q8WXI3 467 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 GAGE12HA6NDE8 117 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 FAM90A27PA6NNH2 459 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 ZNF735P0CB33 412 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 GNRHR2Q96P88 292 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 RNF126Q9BV68 326 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 CDK5RAP2Q96SN8 1893 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 A0A1W2PQD3 144 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 TSPAN2O60636 221 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 ORM2P19652 201 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 CA6P23280 308 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 ZNF83P51522 516 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 TMEM187Q14656 261 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 DMRTC1Q5HYR2 192 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 SF3B5Q9BWJ5 86 aaKnown RBP11.43□□□□□ -0.58
USP40-208ENST00000450966 ZNF785A8K8V0 405 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 PRR33A8MZF0 331 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 LRRC75BQ2VPJ9 315 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 GPR146Q96CH1 333 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 ARID1AO14497 2285 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 COX6B1P14854 86 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 SLAQ13239 276 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 OR4C13Q8NGP0 309 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 CHCHD1Q96BP2 118 aaKnown RBP11.43□□□□□ -0.58
USP40-208ENST00000450966 PILRBQ9UKJ0 227 aa11.43□□□□□ -0.58
USP40-208ENST00000450966 PPIHO43447 177 aaKnown RBP11.42□□□□□ -0.58
USP40-208ENST00000450966 ARL14EPLP0DKL9 152 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 ZNF141Q15928 474 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 OR8B12Q8NGG6 310 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 IL36RNQ9UBH0 155 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 OR9G9P0C7N8 305 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 ERVK11-1P61568 191 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 SPRED2Q7Z698 418 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 BEX4Q9NWD9 120 aaPredicted RBP11.42□□□□□ -0.58
USP40-208ENST00000450966 SS18L2Q9UHA2 77 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 ANKRD31Q8N7Z5 1873 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 A0A0G2JK05 382 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 GAGE12JA6NER3 117 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 K7N7A8 449 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 ATP5LO75964 103 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 GAGE7O76087 117 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 GAGE12FP0CL80 117 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 GAGE12GP0CL81 117 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 GAGE12IP0CL82 117 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 GAGE4Q13068 117 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 PDCD1Q15116 288 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 CENPWQ5EE01 88 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 LRRC29Q8WV35 223 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 SHISA3A0PJX4 238 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 CDX4O14627 284 aaPredicted RBP11.42□□□□□ -0.58
USP40-208ENST00000450966 CTLA4P16410 223 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 MOGAT3Q86VF5 341 aa11.42□□□□□ -0.58
USP40-208ENST00000450966 PIN1P1O15428 100 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 ACP1P24666 158 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 CDAP32320 146 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 A0A1W2PQF6 199 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 C1QTNF9P0C862 333 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 TMEM177Q53S58 311 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 MUC21A0A0G2JKD1 596 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 MUC21A0A140T8X8 626 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 MUC21Q5SSG8 566 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 ZNF562Q6V9R5 426 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 GPR35Q9HC97 309 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 AMMECR1Q9Y4X0 333 aaPredicted RBP11.41□□□□□ -0.58
USP40-208ENST00000450966 RPL36A-HNRNPH2H7BZ11 118 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 RBP4P02753 201 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 FOXL1Q12952 345 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 C19orf24Q9BVV8 132 aa11.41□□□□□ -0.58
USP40-208ENST00000450966 APOHP02749 345 aaPredicted RBP11.41□□□□□ -0.58
USP40-208ENST00000450966 MMP23AO75900 390 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 PMVKQ15126 192 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 HARBI1Q96MB7 349 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 LINC00470Q9BZP3 86 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 ARID1BQ8NFD5 2236 aaPredicted RBP11.4□□□□□ -0.58
USP40-208ENST00000450966 TRAV38-1A0A0B4J264 116 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 DNAL4O96015 105 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 CRYBB3P26998 211 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 CEACAM3P40198 252 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 TMEM160Q9NX00 188 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 COL4A5P29400 1685 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 TMEM8BA6NDV4 472 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 MST1P26927 711 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms