RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SDHCQ99643 169 aaPredicted RBP8.81□□□□□ -1
LIMCH1-203ENST00000396595 FOXC2Q99958 501 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 ASXL3Q9C0F0 2248 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 NPIPB13A6NJU9 1138 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 NPIPB4C9JG80 1138 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 ESDP10768 282 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 FCGR2BP31994 310 aaPredicted RBP8.81□□□□□ -1
LIMCH1-203ENST00000396595 RPL8P62917 257 aaKnown RBP8.81□□□□□ -1
LIMCH1-203ENST00000396595 FHL5Q5TD97 284 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 MMD2Q8IY49 270 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 SP7Q8TDD2 431 aaPredicted RBP8.81□□□□□ -1
LIMCH1-203ENST00000396595 SPSB4Q96A44 273 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 CTHRC1Q96CG8 243 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 SMIM8Q96KF7 97 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 SFXN3Q9BWM7 321 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 WNT10AQ9GZT5 417 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 APELAP0DMC3 54 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 TMEM187Q14656 261 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 RNFT1Q5M7Z0 435 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 WNT2BQ93097 391 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 PGPEP1Q9NXJ5 209 aa8.81□□□□□ -1
LIMCH1-203ENST00000396595 IGKV1D-42A0A075B6H8 117 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 TGFAP01135 160 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 ID1P41134 155 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 HSPE1P61604 102 aaKnown RBP8.8□□□□□ -1
LIMCH1-203ENST00000396595 KCNMB1Q16558 191 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 QTRT1Q9BXR0 403 aaKnown RBP8.8□□□□□ -1
LIMCH1-203ENST00000396595 EDA2RQ9HAV5 297 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 ZNF71Q9NQZ8 489 aaPredicted RBP8.8□□□□□ -1
LIMCH1-203ENST00000396595 KCNMB2Q9Y691 235 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 UNC13CQ8NB66 2214 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 PGPA6NDG6 321 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 C8orf88P0DMB2 117 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 MAS1LP35410 378 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 FAM214BQ7L5A3 538 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 MRAPQ8TCY5 172 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 NEU1Q99519 415 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 IGHV3-21A0A0B4J1V1 117 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 GRIFINA4D1Z8 144 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 TMEM250H0YL14 139 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 COX5BP10606 129 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 ZNF708P17019 499 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 IGHMP01871 453 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 CKS2P33552 79 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 SSBP2P81877 361 aaPredicted RBP8.8□□□□□ -1
LIMCH1-203ENST00000396595 TMEM78Q5T7P6 136 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 C19orf24Q9BVV8 132 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 GTSF1LQ9H1H1 148 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 RABAC1Q9UI14 185 aa8.8□□□□□ -1
LIMCH1-203ENST00000396595 A0A1W2PRS3 328 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 ECSCRQ19T08 205 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 ZNF658BQ4V348 819 aaPredicted RBP8.79□□□□□ -1
LIMCH1-203ENST00000396595 ZNF562Q6V9R5 426 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 PRDM14Q9GZV8 571 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 SH3BGRL3Q9H299 93 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 MAP1LC3AQ9H492 121 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 CARHSP1Q9Y2V2 147 aaKnown RBP8.79□□□□□ -1
LIMCH1-203ENST00000396595 ZNF638Q14966 1978 aaKnown RBP8.79□□□□□ -1
LIMCH1-203ENST00000396595 ODAMA1E959 279 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 GREM1O60565 184 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 TMEM50AO95807 157 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 SNRPCP09234 159 aaKnown RBP8.79□□□□□ -1
LIMCH1-203ENST00000396595 C2orf68Q2NKX9 166 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 TPTE2P1Q5T6R2 138 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 SMRP1Q8NCR6 262 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 ST6GALNAC6Q969X2 333 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 CCL13Q99616 98 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 WNT5BQ9H1J7 359 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 IGKV3-7A0A075B6H7 116 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 IL9P15248 144 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 HOXA5P20719 270 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 ID4P47928 161 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 MFAP4P55083 255 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 MESP2Q0VG99 397 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 NR2C2APQ86WQ0 139 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 OR52E5Q8NH55 327 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 OR4A5Q8NH83 315 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 IGHV1-45A0A0A0MS14 117 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 OR11H12B2RN74 326 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 GPR183P32249 361 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 RPS20P60866 119 aaKnown RBP8.79□□□□□ -1
LIMCH1-203ENST00000396595 SLC22A18ASQ8N1D0 253 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 OR11H1Q8NG94 326 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 OR11H2Q8NH07 326 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 MGST2Q99735 147 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 TNFRSF19Q9NS68 423 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 HILPDAQ9Y5L2 63 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 SPTBP11277 2137 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 C4orf51C9J302 202 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 TIMM23BQ5SRD1 257 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 MOB4Q9Y3A3 225 aa8.79□□□□□ -1
LIMCH1-203ENST00000396595 TBL2Q9Y4P3 447 aaKnown RBP8.79□□□□□ -1
LIMCH1-203ENST00000396595 ARFGEF1Q9Y6D6 1849 aa8.78□□□□□ -1
LIMCH1-203ENST00000396595 ZNF441Q8N8Z8 693 aa8.78□□□□□ -1
LIMCH1-203ENST00000396595 TRAV21A0A0B4J279 112 aa8.78□□□□□ -1
LIMCH1-203ENST00000396595 ARL14EPLP0DKL9 152 aa8.78□□□□□ -1
LIMCH1-203ENST00000396595 RND2P52198 227 aa8.78□□□□□ -1
LIMCH1-203ENST00000396595 NUBP1P53384 320 aa8.78□□□□□ -1
LIMCH1-203ENST00000396595 HIST1H1AQ02539 215 aaPredicted RBP8.78□□□□□ -1
LIMCH1-203ENST00000396595 TMEM186Q96B77 213 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms