RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 IGKV3-15P01624 115 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 SRP14P37108 136 aaKnown RBP18.28■□□□□ 0.52
SHMT1-201ENST00000316694 SOX8P57073 446 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 GNB1P62873 340 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 ACTL10Q5JWF8 245 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 PRAMEF5Q5TYX0 476 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 VWA1Q6PCB0 445 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 CD177Q8N6Q3 437 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 SDSLQ96GA7 329 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 GNG12Q9UBI6 72 aa18.28■□□□□ 0.52
SHMT1-201ENST00000316694 PTPRBP23467 1997 aa18.27■□□□□ 0.52
SHMT1-201ENST00000316694 GGCTO75223 188 aaKnown RBP18.27■□□□□ 0.52
SHMT1-201ENST00000316694 NDUFB4O95168 129 aa18.27■□□□□ 0.52
SHMT1-201ENST00000316694 FAM78BQ5VT40 261 aa18.27■□□□□ 0.52
SHMT1-201ENST00000316694 KCNIP4Q6PIL6 250 aa18.27■□□□□ 0.52
SHMT1-201ENST00000316694 LRRC29Q8WV35 223 aa18.27■□□□□ 0.52
SHMT1-201ENST00000316694 IFNL4K9M1U5 179 aa18.27■□□□□ 0.51
SHMT1-201ENST00000316694 CECR9P0C854 216 aa18.27■□□□□ 0.51
SHMT1-201ENST00000316694 DUTP33316 252 aaKnown RBP18.27■□□□□ 0.51
SHMT1-201ENST00000316694 LINC01551Q86U37 167 aa18.27■□□□□ 0.51
SHMT1-201ENST00000316694 WDR31Q8NA23 367 aa18.27■□□□□ 0.51
SHMT1-201ENST00000316694 RNASEH2CQ8TDP1 164 aaKnown RBP18.27■□□□□ 0.51
SHMT1-201ENST00000316694 ACY3Q96HD9 319 aa18.27■□□□□ 0.51
SHMT1-201ENST00000316694 HEATR1Q9H583 2144 aaKnown RBP18.27■□□□□ 0.51
SHMT1-201ENST00000316694 C15orf65H3BRN8 121 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 CD82P27701 267 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 TNFSF10P50591 281 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 COA6Q5JTJ3 125 aaKnown RBP18.26■□□□□ 0.51
SHMT1-201ENST00000316694 OR4A16Q8NH70 328 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 DIRC2Q96SL1 478 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 HEYLQ9NQ87 328 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-201ENST00000316694 PGPEP1LA6NFU8 196 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 ZNF891A8MT65 544 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-201ENST00000316694 ZNF705GA8MUZ8 300 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-201ENST00000316694 PDE6DO43924 150 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 PROP1O75360 226 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 GCH1P30793 250 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 REC114Q7Z4M0 266 aa18.26■□□□□ 0.51
SHMT1-201ENST00000316694 ADH4P08319 380 aa18.25■□□□□ 0.51
SHMT1-201ENST00000316694 PRDX2P32119 198 aa18.25■□□□□ 0.51
SHMT1-201ENST00000316694 M0R1X1 148 aa18.25■□□□□ 0.51
SHMT1-201ENST00000316694 HTD2P86397 168 aa18.25■□□□□ 0.51
SHMT1-201ENST00000316694 CISD2Q8N5K1 135 aaKnown RBP18.25■□□□□ 0.51
SHMT1-201ENST00000316694 TMEM204Q9BSN7 226 aa18.25■□□□□ 0.51
SHMT1-201ENST00000316694 RRHO14718 337 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 ZNF718Q3SXZ3 478 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 RPL39P5Q59GN2 51 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 HPRT1P00492 218 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 C1QTNF9P0C862 333 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 KITLGP21583 273 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 IL3RAP26951 378 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 KIR2DL2P43627 348 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-201ENST00000316694 SRSF6Q13247 344 aaKnown RBP18.24■□□□□ 0.51
SHMT1-201ENST00000316694 OR2Z1Q8NG97 314 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 Q8TCH9 128 aa18.24■□□□□ 0.51
SHMT1-201ENST00000316694 TYMSP04818 313 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 ARL14EPLP0DKL9 152 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 SPCS3P61009 180 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 PDLIM3Q53GG5 364 aaPredicted RBP18.23■□□□□ 0.51
SHMT1-201ENST00000316694 TREML4Q6UXN2 200 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 C9orf106Q8NAJ2 232 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 LOXL4Q96JB6 756 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 KCNIP2Q9NS61 270 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 BOD1L1Q8NFC6 3051 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 A0A0U1RQK1 487 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 ZNF320A2RRD8 509 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 PDLIM4P50479 330 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 RPP30P78346 268 aaKnown RBP18.23■□□□□ 0.51
SHMT1-201ENST00000316694 ZNF114Q8NC26 417 aa18.23■□□□□ 0.51
SHMT1-201ENST00000316694 A0A1B0GV90 55 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 MORN2Q502X0 79 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 MIC13Q5XKP0 118 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 ALKBH2Q6NS38 261 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 TRAT1Q6PIZ9 186 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 RAB1CQ92928 201 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 MS4A5Q9H3V2 200 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 DUSP13Q9UII6 198 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 TRAV3A0A0B4J244 114 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 CCL11P51671 97 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 ERVK-16P61578 105 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 ABHD12Q8N2K0 398 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 MGST2Q99735 147 aa18.22■□□□□ 0.51
SHMT1-201ENST00000316694 TET2Q6N021 2002 aaPredicted RBP18.21■□□□□ 0.51
SHMT1-201ENST00000316694 IGHV3OR15-7A0A075B7D8 119 aa18.21■□□□□ 0.51
SHMT1-201ENST00000316694 GUSBP1Q15486 140 aa18.21■□□□□ 0.51
SHMT1-201ENST00000316694 ZNF664Q8N3J9 261 aa18.21■□□□□ 0.51
SHMT1-201ENST00000316694 WFIKKN1Q96NZ8 548 aa18.21■□□□□ 0.51
SHMT1-201ENST00000316694 PXMP4Q9Y6I8 212 aa18.21■□□□□ 0.51
SHMT1-201ENST00000316694 TMPRSS2O15393 492 aa18.21■□□□□ 0.5
SHMT1-201ENST00000316694 MPDU1O75352 247 aa18.21■□□□□ 0.5
SHMT1-201ENST00000316694 HNF1AP20823 631 aa18.21■□□□□ 0.5
SHMT1-201ENST00000316694 OPRK1P41145 380 aa18.21■□□□□ 0.5
SHMT1-201ENST00000316694 CNN1P51911 297 aaKnown RBP18.21■□□□□ 0.5
SHMT1-201ENST00000316694 LCN2P80188 198 aa18.21■□□□□ 0.5
SHMT1-201ENST00000316694 MRPL41Q8IXM3 137 aaKnown RBP18.21■□□□□ 0.5
SHMT1-201ENST00000316694 SVILO95425 2214 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 INTS1Q8N201 2190 aaKnown RBP18.2■□□□□ 0.5
SHMT1-201ENST00000316694 IGKV1D-17A0A075B6S4 117 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 IGHV2OR16-5A0A0B4J2B6 119 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 NKX2-8O15522 239 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms