RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 CDC45O75419 566 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 TBX4P57082 545 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 ATP8B2P98198 1209 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 TAGLNQ01995 201 aaKnown RBP13.8□□□□□ -0.2
LINC00538-201ENST00000626109 C9orf131Q5VYM1 1079 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 RPGRQ92834 1020 aaKnown RBP13.8□□□□□ -0.2
LINC00538-201ENST00000626109 GDPD2Q9HCC8 539 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 JADE2Q9NQC1 790 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 TPX2Q9ULW0 747 aaKnown RBP13.8□□□□□ -0.2
LINC00538-201ENST00000626109 IFIT5Q13325 482 aaKnown RBP13.8□□□□□ -0.2
LINC00538-201ENST00000626109 CCDC57Q2TAC2 916 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 CRY2Q49AN0 593 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 GREM2Q9H772 168 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 DCTPP1Q9H773 170 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 ANKRD31Q8N7Z5 1873 aa13.8□□□□□ -0.2
LINC00538-201ENST00000626109 RTL9Q8NET4 1388 aa13.79□□□□□ -0.2
LINC00538-201ENST00000626109 ANKRD18BA2A2Z9 1011 aa13.79□□□□□ -0.2
LINC00538-201ENST00000626109 KLRG2A4D1S0 409 aaPredicted RBP13.79□□□□□ -0.2
LINC00538-201ENST00000626109 GOLGA6L3A6NEY3 463 aa13.79□□□□□ -0.2
LINC00538-201ENST00000626109 ZRANB2O95218 330 aaKnown RBP eCLIP13.79□□□□□ -0.2
LINC00538-201ENST00000626109 AMHR2Q16671 573 aa13.79□□□□□ -0.2
LINC00538-201ENST00000626109 DDX46Q7L014 1031 aaKnown RBP13.79□□□□□ -0.2
LINC00538-201ENST00000626109 SIRT2Q8IXJ6 389 aa13.79□□□□□ -0.2
LINC00538-201ENST00000626109 PNMA6EA0A0J9YXQ4 647 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 H0YIN7 160 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 HSP90AA1P07900 732 aaKnown RBP13.78□□□□□ -0.2
LINC00538-201ENST00000626109 ITGA6P23229 1130 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 TBC1D9Q6ZT07 1266 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 C2CD5Q86YS7 1000 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 GBP4Q96PP9 640 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 MAP3K20Q9NYL2 800 aaKnown RBP13.78□□□□□ -0.2
LINC00538-201ENST00000626109 ISY1Q9ULR0 285 aaKnown RBP13.78□□□□□ -0.2
LINC00538-201ENST00000626109 NPR1P16066 1061 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 SCP2P22307 547 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 CCAR1Q8IX12 1150 aaKnown RBP13.78□□□□□ -0.2
LINC00538-201ENST00000626109 FAM43AQ8N2R8 423 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 SSH3Q8TE77 659 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 RBM17Q96I25 401 aaKnown RBP13.78□□□□□ -0.2
LINC00538-201ENST00000626109 CDC5LQ99459 802 aaKnown RBP13.78□□□□□ -0.2
LINC00538-201ENST00000626109 SENP7Q9BQF6 1050 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 CD2APQ9Y5K6 639 aa13.78□□□□□ -0.2
LINC00538-201ENST00000626109 SPDYE2BA6NHP3 402 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 SPDYE5A6NIY4 337 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 SPDYE6P0CI01 402 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 SRGNP10124 158 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 COPB2P35606 906 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 TSNAXIP1Q2TAA8 658 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 SPDYE2Q495Y8 402 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 MASTLQ96GX5 879 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 KIF13BQ9NQT8 1826 aa13.77□□□□□ -0.21
LINC00538-201ENST00000626109 TGFB2P61812 414 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 TTLL12Q14166 644 aaPredicted RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 SKOR2Q2VWA4 1001 aaPredicted RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 SEC31BQ9NQW1 1179 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 CHRNA5P30532 468 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 HOXA10P31260 410 aaPredicted RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 DDIT3P35638 169 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 IGHMBP2P38935 993 aaKnown RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 RFX5P48382 616 aaPredicted RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 SEMA3FQ13275 785 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 PLEKHG6Q3KR16 790 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 STYK1Q6J9G0 422 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 ANKRD18AQ8IVF6 992 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 HELBQ8NG08 1087 aaPredicted RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 CRAMP1Q96RY5 1269 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 SWAP70Q9UH65 585 aa13.76□□□□□ -0.21
LINC00538-201ENST00000626109 COL11A2P13942 1736 aaPredicted RBP13.76□□□□□ -0.21
LINC00538-201ENST00000626109 K7ELQ4 463 aaPredicted RBP13.75□□□□□ -0.21
LINC00538-201ENST00000626109 ALDH1B1P30837 517 aa13.75□□□□□ -0.21
LINC00538-201ENST00000626109 GRAPQ13588 217 aa13.75□□□□□ -0.21
LINC00538-201ENST00000626109 PLEKHM2Q8IWE5 1019 aa13.75□□□□□ -0.21
LINC00538-201ENST00000626109 GRAPLQ8TC17 118 aaPredicted RBP13.75□□□□□ -0.21
LINC00538-201ENST00000626109 IRF2BPLQ9H1B7 796 aa13.75□□□□□ -0.21
LINC00538-201ENST00000626109 COPRSQ9NQ92 184 aa13.75□□□□□ -0.21
LINC00538-201ENST00000626109 IQSEC3Q9UPP2 1182 aaPredicted RBP13.75□□□□□ -0.21
LINC00538-201ENST00000626109 PTPN12Q05209 780 aaKnown RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 OTUD6BQ8N6M0 293 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 ZNF594Q96JF6 807 aaPredicted RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 SCYL1Q96KG9 808 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 MPHOSPH8Q99549 860 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 PA2G4Q9UQ80 394 aaKnown RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 SURF6O75683 361 aaKnown RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 DPEP1P16444 411 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 RPS8P62241 208 aaKnown RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 TTC22Q5TAA0 569 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 KLHDC4Q8TBB5 520 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 CELF1Q92879 486 aaKnown RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 CNKSR1Q969H4 720 aa13.74□□□□□ -0.21
LINC00538-201ENST00000626109 CTDP1Q9Y5B0 961 aaPredicted RBP13.74□□□□□ -0.21
LINC00538-201ENST00000626109 RABEP1Q15276 862 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 LDHAL6AQ6ZMR3 332 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 FMNL3Q8IVF7 1028 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 MPNDQ8N594 471 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 PROCA1Q8NCQ7 364 aaPredicted RBP13.73□□□□□ -0.21
LINC00538-201ENST00000626109 SIL1Q9H173 461 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 CNNM1Q9NRU3 951 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 LRP5O75197 1615 aa13.73□□□□□ -0.21
LINC00538-201ENST00000626109 A0A0G2JLW4 131 aa13.72□□□□□ -0.21
LINC00538-201ENST00000626109 FSD2A1L4K1 749 aa13.72□□□□□ -0.21
LINC00538-201ENST00000626109 GOLGA6L22H0YM25 854 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms