RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 AOX1Q06278 1338 aa18.32■□□□□ 0.52
TRIM28-207ENST00000597136 PDE4AP27815 886 aa18.32■□□□□ 0.52
TRIM28-207ENST00000597136 PRDX5P30044 214 aa18.32■□□□□ 0.52
TRIM28-207ENST00000597136 MAP1SQ66K74 1059 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-207ENST00000597136 LDHDQ86WU2 507 aa18.32■□□□□ 0.52
TRIM28-207ENST00000597136 RBM46Q8TBY0 533 aaKnown RBP18.32■□□□□ 0.52
TRIM28-207ENST00000597136 CHADLQ6NUI6 762 aa18.31■□□□□ 0.52
TRIM28-207ENST00000597136 ABCF2Q9UG63 623 aa18.31■□□□□ 0.52
TRIM28-207ENST00000597136 SCAF8Q9UPN6 1271 aaKnown RBP18.31■□□□□ 0.52
TRIM28-207ENST00000597136 WNT10BO00744 389 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 ZAP70P43403 619 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 FMR1Q06787 632 aaKnown RBP eCLIP18.3■□□□□ 0.527e-11■■■□□ 14.8
TRIM28-207ENST00000597136 CFAP100Q494V2 611 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 DLK2Q6UY11 383 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 OTUD7AQ8TE49 926 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-207ENST00000597136 ZNF512BQ96KM6 892 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-207ENST00000597136 PRMT6Q96LA8 375 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-207ENST00000597136 PGAP2Q9UHJ9 254 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 HDAC9Q9UKV0 1011 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 SALL1Q9NSC2 1324 aa18.3■□□□□ 0.52
TRIM28-207ENST00000597136 CYP2E1P05181 493 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-207ENST00000597136 ZBED3Q96IU2 234 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-207ENST00000597136 PDS5AQ29RF7 1337 aaKnown RBP18.29■□□□□ 0.52
TRIM28-207ENST00000597136 LDHBP07195 334 aaKnown RBP18.29■□□□□ 0.52
TRIM28-207ENST00000597136 SMC1BQ8NDV3 1235 aa18.29■□□□□ 0.52
TRIM28-207ENST00000597136 ITGBL1O95965 494 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-207ENST00000597136 CRKP46108 304 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 RBM5P52756 815 aaKnown RBP eCLIP18.28■□□□□ 0.52
TRIM28-207ENST00000597136 C1QTNF8P60827 252 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 DLGAP5Q15398 846 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 DIXDC1Q155Q3 683 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 TSHZ3Q63HK5 1081 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 CNTROBQ8N137 903 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 ZNF384Q8TF68 577 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 ANTXR1Q9H6X2 564 aa18.28■□□□□ 0.52
TRIM28-207ENST00000597136 SALL3Q9BXA9 1300 aa18.27■□□□□ 0.52
TRIM28-207ENST00000597136 RGS3P49796 1198 aa18.27■□□□□ 0.52
TRIM28-207ENST00000597136 ANGEL2Q5VTE6 544 aaKnown RBP18.27■□□□□ 0.52
TRIM28-207ENST00000597136 PLEKHM2Q8IWE5 1019 aa18.27■□□□□ 0.52
TRIM28-207ENST00000597136 MTMR14Q8NCE2 650 aa18.27■□□□□ 0.52
TRIM28-207ENST00000597136 ZC3H15Q8WU90 426 aaKnown RBP18.27■□□□□ 0.52
TRIM28-207ENST00000597136 PIH1D3Q9NQM4 214 aaKnown RBP18.27■□□□□ 0.52
TRIM28-207ENST00000597136 SUGT1Q9Y2Z0 365 aa18.27■□□□□ 0.52
TRIM28-207ENST00000597136 MAST2Q6P0Q8 1798 aa18.27■□□□□ 0.52
TRIM28-207ENST00000597136 MMP14P50281 582 aa18.26■□□□□ 0.51
TRIM28-207ENST00000597136 EDC3Q96F86 508 aaKnown RBP18.26■□□□□ 0.51
TRIM28-207ENST00000597136 GLIS2Q9BZE0 524 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-207ENST00000597136 BOLA2Q9H3K6 86 aa18.26■□□□□ 0.51
TRIM28-207ENST00000597136 GGA3Q9NZ52 723 aa18.26■□□□□ 0.51
TRIM28-207ENST00000597136 SERPINA10Q9UK55 444 aa18.26■□□□□ 0.51
TRIM28-207ENST00000597136 SPDYE2BA6NHP3 402 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 TRAF5O00463 557 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 SPDYE6P0CI01 402 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 ATP5JP18859 108 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 MX1P20591 662 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 FSTL1Q12841 308 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 ERICH6Q7L0X2 663 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 USP48Q86UV5 1035 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 STAP2Q9UGK3 403 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 PDE1AP54750 535 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 HDLBPQ00341 1268 aaKnown RBP18.25■□□□□ 0.51
TRIM28-207ENST00000597136 MECOMQ03112 1051 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 ZGPATQ8N5A5 531 aaKnown RBP18.25■□□□□ 0.51
TRIM28-207ENST00000597136 TEKT1Q969V4 418 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 MRIQ9BWK5 157 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 TDRD3Q9H7E2 651 aaKnown RBP18.25■□□□□ 0.51
TRIM28-207ENST00000597136 LRP2BPQ9P2M1 347 aa18.25■□□□□ 0.51
TRIM28-207ENST00000597136 CEP350Q5VT06 3117 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 FOCADQ5VW36 1801 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 CLRN2A0PK11 232 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 ADM5C9JUS6 153 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 SPTY2D1Q68D10 685 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-207ENST00000597136 APOBEC3HQ6NTF7 200 aaKnown RBP18.24■□□□□ 0.51
TRIM28-207ENST00000597136 HHIPL2Q6UWX4 724 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 DNAJC2Q99543 621 aaKnown RBP18.24■□□□□ 0.51
TRIM28-207ENST00000597136 ECHDC1Q9NTX5 307 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 RAI14Q9P0K7 980 aa18.24■□□□□ 0.51
TRIM28-207ENST00000597136 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.23■□□□□ 0.51
TRIM28-207ENST00000597136 DCPSQ96C86 337 aaKnown RBP18.23■□□□□ 0.51
TRIM28-207ENST00000597136 NSUN4Q96CB9 384 aaKnown RBP18.23■□□□□ 0.51
TRIM28-207ENST00000597136 ZDHHC15Q96MV8 337 aa18.23■□□□□ 0.51
TRIM28-207ENST00000597136 OSBPL3Q9H4L5 887 aa18.23■□□□□ 0.51
TRIM28-207ENST00000597136 DAGLAQ9Y4D2 1042 aa18.23■□□□□ 0.51
TRIM28-207ENST00000597136 MAST3O60307 1309 aa18.23■□□□□ 0.51
TRIM28-207ENST00000597136 MYH1P12882 1939 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 GOLIM4O00461 696 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 PRAMEF18Q5VWM3 479 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 KRT26Q7Z3Y9 468 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 DZIP1Q86YF9 867 aaKnown RBP18.22■□□□□ 0.51
TRIM28-207ENST00000597136 GPATCH3Q96I76 525 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 ZNF70Q9UC06 446 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-207ENST00000597136 TTC41PQ6P2S7 1318 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 PASKQ96RG2 1323 aa18.22■□□□□ 0.51
TRIM28-207ENST00000597136 CACNB3P54284 484 aa18.21■□□□□ 0.51
TRIM28-207ENST00000597136 CDC37L1Q7L3B6 337 aa18.21■□□□□ 0.51
TRIM28-207ENST00000597136 HAUS7Q99871 368 aa18.21■□□□□ 0.51
TRIM28-207ENST00000597136 PI4K2BQ8TCG2 481 aa18.21■□□□□ 0.51
TRIM28-207ENST00000597136 IDH1O75874 414 aaKnown RBP18.2■□□□□ 0.5
TRIM28-207ENST00000597136 MAP4K4O95819 1239 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-207ENST00000597136 SPDYE2Q495Y8 402 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms