RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ZAP70P43403 619 aa21.38■■□□□ 1.01
SHMT2-225ENST00000556798 RBM5P52756 815 aaKnown RBP eCLIP21.38■■□□□ 1.01
SHMT2-225ENST00000556798 ZGPATQ8N5A5 531 aaKnown RBP21.38■■□□□ 1.01
SHMT2-225ENST00000556798 SUGT1Q9Y2Z0 365 aa21.38■■□□□ 1.01
SHMT2-225ENST00000556798 TRPM7Q96QT4 1865 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 AOX1Q06278 1338 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 WNT10BO00744 389 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 NEFLP07196 543 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 CRKP46108 304 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 DLGAP5Q15398 846 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 TSHZ3Q63HK5 1081 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 OTUD7AQ8TE49 926 aaPredicted RBP21.37■■□□□ 1.01
SHMT2-225ENST00000556798 GGA3Q9NZ52 723 aa21.37■■□□□ 1.01
SHMT2-225ENST00000556798 ZBTB47Q9UFB7 747 aaPredicted RBP21.37■■□□□ 1.01
SHMT2-225ENST00000556798 MAST3O60307 1309 aa21.36■■□□□ 1.01
SHMT2-225ENST00000556798 CYP2E1P05181 493 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-225ENST00000556798 MMP14P50281 582 aa21.36■■□□□ 1.01
SHMT2-225ENST00000556798 DIXDC1Q155Q3 683 aa21.36■■□□□ 1.01
SHMT2-225ENST00000556798 ZBED3Q96IU2 234 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-225ENST00000556798 SERPINA10Q9UK55 444 aa21.36■■□□□ 1.01
SHMT2-225ENST00000556798 SPDYE2BA6NHP3 402 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 SPDYE6P0CI01 402 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 C1QTNF8P60827 252 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 FSTL1Q12841 308 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 ANGEL2Q5VTE6 544 aaKnown RBP21.35■■□□□ 1.01
SHMT2-225ENST00000556798 ERICH6Q7L0X2 663 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 DZIP1Q86YF9 867 aaKnown RBP21.35■■□□□ 1.01
SHMT2-225ENST00000556798 CNTROBQ8N137 903 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 ZC3H15Q8WU90 426 aaKnown RBP21.35■■□□□ 1.01
SHMT2-225ENST00000556798 TEKT1Q969V4 418 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 PRMT6Q96LA8 375 aaPredicted RBP21.35■■□□□ 1.01
SHMT2-225ENST00000556798 PGAP2Q9UHJ9 254 aa21.35■■□□□ 1.01
SHMT2-225ENST00000556798 SCAF8Q9UPN6 1271 aaKnown RBP21.35■■□□□ 1.01
SHMT2-225ENST00000556798 SPTY2D1Q68D10 685 aaPredicted RBP21.34■■□□□ 1.01
SHMT2-225ENST00000556798 MTMR14Q8NCE2 650 aa21.34■■□□□ 1.01
SHMT2-225ENST00000556798 DNAJC2Q99543 621 aaKnown RBP21.34■■□□□ 1.01
SHMT2-225ENST00000556798 GLIS2Q9BZE0 524 aaPredicted RBP21.34■■□□□ 1.01
SHMT2-225ENST00000556798 LNPKQ9C0E8 428 aa21.34■■□□□ 1.01
SHMT2-225ENST00000556798 BOLA2Q9H3K6 86 aa21.34■■□□□ 1.01
SHMT2-225ENST00000556798 ANTXR1Q9H6X2 564 aa21.34■■□□□ 1.01
SHMT2-225ENST00000556798 PIH1D3Q9NQM4 214 aaKnown RBP21.34■■□□□ 1.01
SHMT2-225ENST00000556798 RAI14Q9P0K7 980 aa21.34■■□□□ 1.01
SHMT2-225ENST00000556798 ATP5JP18859 108 aa21.33■■□□□ 1.01
SHMT2-225ENST00000556798 HDLBPQ00341 1268 aaKnown RBP21.33■■□□□ 1.01
SHMT2-225ENST00000556798 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.33■■□□□ 1.01
SHMT2-225ENST00000556798 DCPSQ96C86 337 aaKnown RBP21.33■■□□□ 1.01
SHMT2-225ENST00000556798 ECHDC1Q9NTX5 307 aa21.33■■□□□ 1.01
SHMT2-225ENST00000556798 LRP2BPQ9P2M1 347 aa21.33■■□□□ 1.01
SHMT2-225ENST00000556798 CLRN2A0PK11 232 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 ADM5C9JUS6 153 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 TRAF5O00463 557 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 MECOMQ03112 1051 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 FMR1Q06787 632 aaKnown RBP eCLIP21.32■■□□□ 1
SHMT2-225ENST00000556798 DLK2Q6UY11 383 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 ZNF384Q8TF68 577 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 EDC3Q96F86 508 aaKnown RBP21.32■■□□□ 1
SHMT2-225ENST00000556798 GPATCH3Q96I76 525 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 DAGLAQ9Y4D2 1042 aa21.32■■□□□ 1
SHMT2-225ENST00000556798 ITGBL1O95965 494 aaPredicted RBP21.31■■□□□ 1
SHMT2-225ENST00000556798 KRT26Q7Z3Y9 468 aa21.31■■□□□ 1
SHMT2-225ENST00000556798 USP48Q86UV5 1035 aa21.31■■□□□ 1
SHMT2-225ENST00000556798 ZDHHC15Q96MV8 337 aa21.31■■□□□ 1
SHMT2-225ENST00000556798 TDRD3Q9H7E2 651 aaKnown RBP21.31■■□□□ 1
SHMT2-225ENST00000556798 SALL3Q9BXA9 1300 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 CDK5RAP2Q96SN8 1893 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 GOLIM4O00461 696 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 MYO1BO43795 1136 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 MX1P20591 662 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 NUCB1Q02818 461 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 HHIPL2Q6UWX4 724 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 CHD1LQ86WJ1 897 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 NSUN4Q96CB9 384 aaKnown RBP21.3■■□□□ 1
SHMT2-225ENST00000556798 VEZTQ9HBM0 779 aa21.3■■□□□ 1
SHMT2-225ENST00000556798 PITPNM2Q9BZ72 1349 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 IDH1O75874 414 aaKnown RBP21.29■■□□□ 1
SHMT2-225ENST00000556798 APOBEC3HQ6NTF7 200 aaKnown RBP21.29■■□□□ 1
SHMT2-225ENST00000556798 CDC37L1Q7L3B6 337 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 SULF1Q8IWU6 871 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 HAUS7Q99871 368 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 MRIQ9BWK5 157 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 GAKO14976 1311 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 TTC41PQ6P2S7 1318 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 PASKQ96RG2 1323 aa21.29■■□□□ 1
SHMT2-225ENST00000556798 AK9Q5TCS8 1911 aa21.28■■□□□ 1
SHMT2-225ENST00000556798 SPDYE2Q495Y8 402 aa21.28■■□□□ 1
SHMT2-225ENST00000556798 PAG1Q9NWQ8 432 aa21.28■■□□□ 1
SHMT2-225ENST00000556798 ZNF70Q9UC06 446 aaPredicted RBP21.28■■□□□ 1
SHMT2-225ENST00000556798 MROH7-TTC4A0A0A0MT08 1334 aa21.28■■□□□ 1
SHMT2-225ENST00000556798 CACNB3P54284 484 aa21.27■■□□□ 1
SHMT2-225ENST00000556798 NAA16Q6N069 864 aaPredicted RBP21.27■■□□□ 1
SHMT2-225ENST00000556798 APOBEC3FQ8IUX4 373 aaKnown RBP21.27■■□□□ 1
SHMT2-225ENST00000556798 PI4K2BQ8TCG2 481 aa21.27■■□□□ 1
SHMT2-225ENST00000556798 MAP4K4O95819 1239 aaPredicted RBP21.26■□□□□ 0.99
SHMT2-225ENST00000556798 GSTO1P78417 241 aa21.26■□□□□ 0.99
SHMT2-225ENST00000556798 TTF1Q15361 905 aaPredicted RBP21.26■□□□□ 0.99
SHMT2-225ENST00000556798 SLF2Q8IX21 1173 aa21.26■□□□□ 0.99
SHMT2-225ENST00000556798 FOCADQ5VW36 1801 aa21.26■□□□□ 0.99
SHMT2-225ENST00000556798 BTDP43251 543 aa21.25■□□□□ 0.99
SHMT2-225ENST00000556798 PDE1AP54750 535 aa21.25■□□□□ 0.99
SHMT2-225ENST00000556798 PRAMEF18Q5VWM3 479 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms