RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 UBE2KP61086 200 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 GNB2P62879 340 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 CLINT1Q14677 625 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 ZNF833PQ6ZTB9 187 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 C11orf42Q8N5U0 333 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 TMEM217Q8N7C4 229 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 RBKSQ9H477 322 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 PSENENQ9NZ42 101 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 SESN1Q9Y6P5 492 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 MALRD1Q5VYJ5 2156 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 LEUTXA8MZ59 168 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 OR9G9P0C7N8 305 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 CT45A6P0DMU7 189 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 CT45A5P0DMU8 189 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 CT45A7P0DMV0 189 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 GPR6P46095 362 aaPredicted RBP10.93□□□□□ -0.66
HMGB1-202ENST00000339872 EFNA4P52798 201 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 OR2B8PP59922 312 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 TMEM267Q0VDI3 215 aaPredicted RBP10.93□□□□□ -0.66
HMGB1-202ENST00000339872 ABHD12Q8N2K0 398 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 UBAC2Q8NBM4 344 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 RBMXL1Q96E39 390 aaKnown RBP10.93□□□□□ -0.66
HMGB1-202ENST00000339872 TMEM133Q9H2Q1 129 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 PATZ1Q9HBE1 687 aaKnown RBP10.93□□□□□ -0.66
HMGB1-202ENST00000339872 AUP1Q9Y679 476 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 A0A087X0M5 115 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 A0A1B0GX30 115 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 TXNL1O43396 289 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 DLX1P56177 255 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 BAXQ07812 192 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 STX12Q86Y82 276 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 LINC00311Q8N616 119 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 C8orf31Q8N9H6 132 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 OR5C1Q8NGR4 320 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 OR9G1Q8NH87 305 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 C8orf46Q8TAG6 207 aa10.93□□□□□ -0.66
HMGB1-202ENST00000339872 MRPL20Q9BYC9 149 aaKnown RBP10.93□□□□□ -0.66
HMGB1-202ENST00000339872 C22orf46C9J442 243 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 FBXO24O75426 580 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 MED6O75586 246 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 RRASP10301 218 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 REG1BP48304 166 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 DYNLT3P51808 116 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 EIF5AL1Q6IS14 154 aaKnown RBP10.92□□□□□ -0.66
HMGB1-202ENST00000339872 ZNF596Q8TC21 504 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 QTRT1Q9BXR0 403 aaKnown RBP10.92□□□□□ -0.66
HMGB1-202ENST00000339872 SLC35D1Q9NTN3 355 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 TMEM140Q9NV12 185 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 TEX46H3BTG2 121 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 GOSR1O95249 250 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 PRB3Q04118 309 aaPredicted RBP10.92□□□□□ -0.66
HMGB1-202ENST00000339872 RTL8BQ17RB0 113 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 SPINK9Q5DT21 86 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 OR4A16Q8NH70 328 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 SMIM8Q96KF7 97 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 SSBP3Q9BWW4 388 aaPredicted RBP10.92□□□□□ -0.66
HMGB1-202ENST00000339872 ONECUT1Q9UBC0 465 aa10.92□□□□□ -0.66
HMGB1-202ENST00000339872 KLF2Q9Y5W3 355 aaPredicted RBP10.92□□□□□ -0.66
HMGB1-202ENST00000339872 FAM90A9PA6NNJ1 464 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 LIPFP07098 398 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 SULT1A1P50225 295 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 TAS2R30P59541 319 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 DIAPH2-AS1Q14236 149 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 SPANXN5Q5MJ07 72 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 ZDHHC16Q969W1 377 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 RHOVQ96L33 236 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 PFDN2Q9UHV9 154 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 DOPEY1Q5JWR5 2465 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 IGHV2-26A0A0B4J1V2 119 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 CEBPZOSA8MTT3 80 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 APOA2P02652 100 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 IGKV1-16P04430 117 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 METTL15P1P0C7V9 234 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 TLE4Q04727 773 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 ZNF266Q14584 549 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 HSD17B11Q8NBQ5 300 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 OR1S2Q8NGQ3 325 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 OR13D1Q8NGV5 346 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 DTD1Q8TEA8 209 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 RNF141Q8WVD5 230 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 TMEM186Q96B77 213 aa10.91□□□□□ -0.66
HMGB1-202ENST00000339872 TRAV3A0A0B4J244 114 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 ANKRD34BA5PLL1 514 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 H7C2Y5 167 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 OVOL3O00110 214 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 HRASP01112 189 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 IFNA17P01571 189 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 RBP4P02753 201 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 DHRS7BQ6IAN0 325 aaPredicted RBP10.9□□□□□ -0.66
HMGB1-202ENST00000339872 OR4A47Q6IF82 309 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 FAM71F2Q6NXP2 309 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 ZNF525Q8N782 197 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 LY6G5BQ8NDX9 201 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 ARV1Q9H2C2 271 aa10.9□□□□□ -0.66
HMGB1-202ENST00000339872 hCG_1809904A0A1W2PP81 198 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 A0A1W2PPE2 198 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 A0A1W2PR64 198 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 A0A1W2PRV1 198 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 FGF16O43320 207 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 COX7A1P24310 79 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 241 ms