RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF799Q96GE5 643 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SEC11CQ9BY50 192 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SC5DO75845 299 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 CELP19835 753 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 GPR6P46095 362 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 CDC42P60953 191 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 TNFAIP6P98066 277 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 OR8B8Q15620 311 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 TP53I3Q53FA7 332 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 OR52L2PQ8NGH6 319 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 OR1F12Q8NHA8 337 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 ITLN1Q8WWA0 313 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 BTF3L4Q96K17 158 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 PATZ1Q9HBE1 687 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 YLPM1P49750 1951 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 IGHV4-61A0A0C4DH41 118 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 IFITM10A6NMD0 228 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 DANCRP0C864 163 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 ENDOGQ14249 297 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 MOGAT3Q86VF5 341 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 SLAMF6Q96DU3 332 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 MXRA5Q9NR99 2828 aa6.68□□□□□ -1.34
LIMCH1-219ENST00000514096 ELK1P19419 428 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC6A1P30531 599 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 IKZF1Q13422 519 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 SOHLH1Q5JUK2 328 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF788Q6ZQV5 615 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 NIT1Q86X76 327 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST3H2BBQ8N257 126 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 KCNRGQ8N5I3 272 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 CASTOR1Q8WTX7 329 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BLQ99880 126 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 VAMP8Q9BV40 100 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 MRPL13Q9BYD1 178 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 GEMIN7Q9H840 131 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 OR5V1Q9UGF6 321 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 NOP16Q9Y3C1 178 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 LHFPL6Q9Y693 200 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ODAMA1E959 279 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 HAND1O96004 215 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 PSG7Q13046 419 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC25A47Q6Q0C1 308 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ARL9Q6T311 187 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM91Q6ZNR0 172 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 NPEPL1Q8NDH3 523 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 GJC3Q8NFK1 279 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 OR2T27Q8NH04 317 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 IGFBPL1Q8WX77 278 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ORAI1Q96D31 301 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 KIRREL1Q96J84 757 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF582Q96NG8 517 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 GP6Q9HCN6 339 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 TRIM36Q9NQ86 728 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 THYN1Q9P016 225 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF670-ZNF695F2Z2N8 137 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 J3QLW9 94 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ENTPD6O75354 484 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 TOX4O94842 621 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 NBEAP1P0C6P0 100 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF19P17023 458 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 LIMS1P48059 325 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 PCBD1P61457 104 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 MRPS34P82930 218 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 DGCR2P98153 550 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 PJVKQ0ZLH3 352 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 JOSD1Q15040 202 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 PDCD1Q15116 288 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 C20orf204Q6ZNR8 217 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC35E3Q7Z769 313 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 DMBX1Q8NFW5 382 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF519Q8TB69 540 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 RNF141Q8WVD5 230 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM18Q96B42 140 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 OR2V2Q96R30 315 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 ABHD6Q9BV23 337 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 C1orf198Q9H425 327 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC22A13Q9Y226 551 aa6.67□□□□□ -1.34
LIMCH1-219ENST00000514096 HELTA6NFD8 242 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BKO60814 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BJP06899 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 SFTPBP07988 381 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 OR2T7P0C7T2 308 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 AZU1P20160 251 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BOP23527 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BBP33778 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 GABRA2P47869 451 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 CX3CR1P49238 355 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 NPY4RP50391 375 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BDP58876 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 CD81P60033 236 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 ZP1P60852 638 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BCP62807 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 MALLQ13021 153 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 FHL1Q13642 323 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST2H2BEQ16778 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 ANXA2RQ3ZCQ2 193 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 C5orf24Q7Z6I8 188 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 FRZBQ92765 325 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BHQ93079 126 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms