RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NCBP2LA6PVI3 153 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 TSC22D2O75157 780 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 MOSP00540 346 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 HBZP02008 142 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 RCC1P18754 421 aaPredicted RBP5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 SRMP19623 302 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 CD1BP29016 333 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 VHLP40337 213 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF137PP52743 207 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC35A2P78381 396 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC35B1P78383 322 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 EBI3Q14213 229 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 INSL4Q14641 139 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 IRF3Q14653 427 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 GAGE13Q4V321 117 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 HSD17B12Q53GQ0 312 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 C1orf100Q5SVJ3 147 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 FAM27D1Q5T7N8 215 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 LIPKQ5VXJ0 399 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 SIGIRRQ6IA17 410 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 FAM53AQ6NSI3 398 aaPredicted RBP5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 C10orf99Q6UWK7 81 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 CEACAM19Q7Z692 300 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC35E3Q7Z769 313 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF554Q86TJ5 538 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 LRRTM1Q86UE6 522 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 TGIF2LXQ8IUE1 241 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 FOXRED2Q8IWF2 684 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 OR10V1Q8NGI7 309 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 OR2T10Q8NGZ9 312 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 OR1L1Q8NH94 360 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 NRG4Q8WWG1 115 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 ST6GALNAC6Q969X2 333 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 NEDD4LQ96PU5 975 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 TMEM59Q9BXS4 323 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 ANKRD60Q9BZ19 345 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 TAF9BQ9HBM6 251 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 OR2S2Q9NQN1 319 aa5.37□□□□□ -1.55
CCDC88A-213ENST00000476903 IGHV3-72A0A0B4J1Y9 119 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 SERPINE3A8MV23 424 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC22A1O15245 554 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC31A2O15432 143 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 RGS10O43665 173 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 LANCL1O43813 399 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 RGS11O94810 467 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 IGHG2P01859 326 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 UCHL1P09936 223 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 HSMCR30P0CW71 290 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 MYF6P23409 242 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 PSMA1P25786 263 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 CHATP28329 748 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 HTR2CP28335 458 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 HSPA13P48723 471 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF134P52741 427 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 KRTAP10-7P60409 375 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 RPS27AP62979 156 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 HTD2P86397 168 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 TRAM1Q15629 374 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 MORN2Q502X0 79 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 CT45A1Q5HYN5 189 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF329Q86UD4 541 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 COMMD1Q8N668 190 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 Q8N6K4 173 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 Q8N9W7 124 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF439Q8NDP4 499 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 WFDC9Q8NEX5 89 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 OR51D1Q8NGF3 324 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 OR6M1Q8NGM8 313 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 CT45A3Q8NHU0 189 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 KCNG3Q8TAE7 436 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 MRPL30Q8TCC3 161 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 SGCDQ92629 289 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 TMEM203Q969S6 136 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 PHF21AQ96BD5 680 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 GALMQ96C23 342 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 NOL4LQ96MY1 436 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 RASL11BQ9BPW5 248 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ABHD14AQ9BUJ0 271 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 TM2D1Q9BX74 207 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 CCDC90BQ9GZT6 254 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ABCG5Q9H222 651 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 DUSP21Q9H596 190 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ISYNA1Q9NPH2 558 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 LIN7CQ9NUP9 197 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 NECAP2Q9NVZ3 263 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 ABRACLQ9P1F3 81 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 JPT1Q9UK76 154 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 LRRC42Q9Y546 428 aa5.36□□□□□ -1.55
CCDC88A-213ENST00000476903 LINC00854A0A1B0GVQ3 168 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 TMEM14DPA8MWL7 114 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 AP4M1O00189 453 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 YPEL1O60688 119 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 ARL6IP5O75915 188 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 DUS4LO95620 317 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 PRB2P02812 416 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 CD37P11049 281 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 IGLL1P15814 213 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 ARSBP15848 533 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 CRHBPP24387 322 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC6A1P30531 599 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms