RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 BLVRBP30043 206 aaPredicted RBP12.67□□□□□ -0.38
CLN3-255ENST00000637100 NDPQ00604 133 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 C6orf141Q5SZD1 244 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 ZNF660Q6AZW8 331 aaPredicted RBP12.67□□□□□ -0.38
CLN3-255ENST00000637100 ZFP1Q6P2D0 407 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 CD200R1LQ6Q8B3 271 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 Q8N1Y9 231 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 Q96M66 194 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 ZNF251Q9BRH9 671 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 KRTAP17-1Q9BYP8 105 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 OR2S2Q9NQN1 319 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 FBXO7Q9Y3I1 522 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 PEX16Q9Y5Y5 336 aa12.67□□□□□ -0.38
CLN3-255ENST00000637100 STARD9Q9P2P6 4700 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 LINC01619G3V211 115 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 LY86O95711 162 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 LGALS1P09382 135 aaKnown RBP12.66□□□□□ -0.38
CLN3-255ENST00000637100 GNMTQ14749 295 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 Q499Y3 187 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 YIF1BQ5BJH7 314 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 OR2G6Q5TZ20 316 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 FAM71F2Q6NXP2 309 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 TCTEX1D1Q8N7M0 179 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 OR13C5Q8NGS8 318 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 MRPL30Q8TCC3 161 aaKnown RBP12.66□□□□□ -0.38
CLN3-255ENST00000637100 GHSRQ92847 366 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 PGLYRP3Q96LB9 341 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 OR14A2Q96R54 314 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 ABHD14AQ9BUJ0 271 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 MRPL20Q9BYC9 149 aaKnown RBP12.66□□□□□ -0.38
CLN3-255ENST00000637100 CST11Q9H112 138 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 EDA2RQ9HAV5 297 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 C19orf73Q9NVV2 129 aa12.66□□□□□ -0.38
CLN3-255ENST00000637100 MRPS28Q9Y2Q9 187 aaKnown RBP12.66□□□□□ -0.38
CLN3-255ENST00000637100 TRIM64CA6NLI5 447 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 ARPC1BO15143 372 aaKnown RBP12.65□□□□□ -0.38
CLN3-255ENST00000637100 SAP30O75446 220 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 CIB2O75838 187 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 SMN1Q16637 294 aaKnown RBP12.65□□□□□ -0.38
CLN3-255ENST00000637100 GLIPR1L1Q6UWM5 242 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 TMPRSS11AQ6ZMR5 421 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 OVCH2Q7RTZ1 564 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 OR52L2PQ8NGH6 319 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 OR6Q1Q8NGQ2 317 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 CYYR1Q96J86 154 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 OR5B12Q96R08 314 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 C9orf16Q9BUW7 83 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 ALX4Q9H161 411 aaPredicted RBP12.65□□□□□ -0.38
CLN3-255ENST00000637100 PARP11Q9NR21 331 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 DIMT1Q9UNQ2 313 aaKnown RBP12.65□□□□□ -0.38
CLN3-255ENST00000637100 LRRC42Q9Y546 428 aa12.65□□□□□ -0.38
CLN3-255ENST00000637100 IGHV4OR15-8A0A075B7B6 117 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 A0A087WW49 117 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 OR8U9P0C7N5 309 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 MGMTP16455 207 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 SLURP1P55000 103 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 CX3CL1P78423 397 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 C5orf24Q7Z6I8 188 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 MUL1Q969V5 352 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 RHOVQ96L33 236 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 IFI27L2Q9H2X8 130 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 GHITMQ9H3K2 345 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 ZMAT4Q9H898 229 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 FOXA2Q9Y261 457 aaPredicted RBP12.64□□□□□ -0.39
CLN3-255ENST00000637100 ERGIC3Q9Y282 383 aa12.64□□□□□ -0.39
CLN3-255ENST00000637100 RRHO14718 337 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 IGLV1-51P01701 117 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 PPP1CCP36873 323 aaKnown RBP12.63□□□□□ -0.39
CLN3-255ENST00000637100 VEGFCP49767 419 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 HMGN3Q15651 99 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 AKIRIN2Q53H80 203 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 PYHIN1Q6K0P9 492 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 PRR18Q8N4B5 295 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 RNF5Q99942 180 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 KCNIP1Q9NZI2 227 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 CKLFQ9UBR5 152 aa12.63□□□□□ -0.39
CLN3-255ENST00000637100 SAA2-SAA4A0A096LPE2 208 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 ITGB1BP1O14713 200 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 LDLRAD4O15165 306 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 PDCD6O75340 191 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 RGS11O94810 467 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 HSPB1P04792 205 aaKnown RBP12.62□□□□□ -0.39
CLN3-255ENST00000637100 CD1AP06126 327 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 SAA2P0DJI9 122 aaPredicted RBP12.62□□□□□ -0.39
CLN3-255ENST00000637100 OR3A3P47888 321 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 ZNF880Q6PDB4 577 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 ARPC1AQ92747 370 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 AGMATQ9BSE5 352 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 SELENOIQ9C0D9 397 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 BANF2Q9H503 90 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 GHRLQ9UBU3 117 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 CLEC2DQ9UHP7 191 aa12.62□□□□□ -0.39
CLN3-255ENST00000637100 EXOSC1Q9Y3B2 195 aaKnown RBP12.62□□□□□ -0.39
CLN3-255ENST00000637100 A0A1W2PN81 502 aa12.61□□□□□ -0.39
CLN3-255ENST00000637100 IRGMA1A4Y4 181 aa12.61□□□□□ -0.39
CLN3-255ENST00000637100 UBE2QL1A1L167 161 aa12.61□□□□□ -0.39
CLN3-255ENST00000637100 FCN1O00602 326 aa12.61□□□□□ -0.39
CLN3-255ENST00000637100 HSPA12AO43301 675 aa12.61□□□□□ -0.39
CLN3-255ENST00000637100 MAS1P04201 325 aa12.61□□□□□ -0.39
CLN3-255ENST00000637100 CT45A6P0DMU7 189 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms