RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CD24P25063 80 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 MAPK3P27361 379 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 SSTR5P35346 364 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 MECP2P51608 486 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 WNT4P56705 351 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 RPS11P62280 158 aaKnown RBP eCLIP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 EMX1Q04741 257 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 MADCAM1Q13477 382 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 LTC4SQ16873 150 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 NSUN5P1Q3KNT7 163 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 SLC22A6Q4U2R8 563 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 ATAD3CQ5T2N8 411 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 KRTAP5-11Q6L8G4 156 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 AHSA2Q719I0 299 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 JAGN1Q8N5M9 183 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 BPIFB6Q8NFQ5 453 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 OR4F17Q8NGA8 305 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 NEK7Q8TDX7 302 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 WIPF2Q8TF74 440 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 LEAP2Q969E1 77 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 ORAI1Q96D31 301 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 MRPS24Q96EL2 167 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 DERL3Q96Q80 235 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 OR4F4Q96R69 305 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 OR5M11Q96RB7 305 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 SLC25A33Q9BSK2 321 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 SPACA1Q9HBV2 294 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 PLCXD1Q9NUJ7 323 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF581Q9P0T4 197 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 ERGIC3Q9Y282 383 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 MRPS28Q9Y2Q9 187 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 TRAV39A0A0B4J263 110 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 A0A1W2PPK0 400 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 UBE2QL1A1L167 161 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 AIPO00170 330 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 SDCBPO00560 298 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 IGHV3-7P01780 117 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 MAS1P04201 325 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 LPLP06858 475 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 CELP19835 753 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 GNG10P50151 68 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 RAB7AP51149 207 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 ABCA11PQ4W5N1 156 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 UTF1Q5T230 341 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 HIST2H2BDQ6DRA6 164 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 AWAT2Q6E213 333 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 LAIR2Q6ISS4 152 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 GLIPR1L1Q6UWM5 242 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 CENPVQ7Z7K6 275 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 THNSL2Q86YJ6 484 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 CDH26Q8IXH8 852 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 OR8H3Q8N146 312 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 LYG1Q8N1E2 194 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 NANOGP1Q8N7R0 232 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 DRAXINQ8NBI3 349 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 OR5AU1Q8NGC0 362 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 OR52M1Q8NGK5 317 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 OR10X1Q8NGY0 326 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 RFESDQ8TAC1 157 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 TFAP2CQ92754 450 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 MUL1Q969V5 352 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 CITED2Q99967 270 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 UQCC2Q9BRT2 126 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 MND1Q9BWT6 205 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 DCLRE1BQ9H816 532 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 RAB9BQ9NP90 201 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 FKBP14Q9NWM8 211 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 PSG11Q9UQ72 335 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 MOB4Q9Y3A3 225 aa5.41□□□□□ -1.54
CCDC88A-213ENST00000476903 A0A1W2PP11 408 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 A0A1W2PPI3 338 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A10PA6NDY2 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A18PA6NE21 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A16PA6NEW6 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A20PA6NIJ5 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A7PA6NKC0 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A9PA6NNJ1 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A12PA8MX19 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A5PA8MXJ8 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A23PA8MXZ1 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 MCRIP1C9JLW8 97 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 G3V4G9 280 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 C15orf65H3BRN8 121 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 HSD17B6O14756 317 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 ORC5O43913 435 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 MT-ND4P03905 459 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 AMY1AP04745 511 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 CDK1P06493 297 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 SNRNP70P08621 437 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A15PP0C7V4 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A13PP0C7W8 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A14PP0C7W9 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A24PP0C7X0 464 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM11P17152 192 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 IL3RAP26951 378 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 GPR50Q13585 617 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 HES1Q14469 280 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM30BQ3MIR4 351 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 RNLSQ5VYX0 342 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 TRAT1Q6PIZ9 186 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms