RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 C5orf24Q7Z6I8 188 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 ZNF329Q86UD4 541 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 CDH26Q8IXH8 852 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 C8orf31Q8N9H6 132 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 OR4X2Q8NGF9 303 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 OR4K15Q8NH41 348 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 SGCDQ92629 289 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 PHF21AQ96BD5 680 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 Q96M66 194 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 NOL4LQ96MY1 436 aaPredicted RBP8.57□□□□□ -1.04
VPS39-208ENST00000564994 SELENOIQ9C0D9 397 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 SPACA1Q9HBV2 294 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 ETAA1Q9NY74 926 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 NKX1-2Q9UD57 310 aaPredicted RBP8.57□□□□□ -1.04
VPS39-208ENST00000564994 PEX16Q9Y5Y5 336 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 PSMB11A5LHX3 300 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 LINC01548A6NM66 108 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 ZNF736B4DX44 427 aaPredicted RBP8.56□□□□□ -1.04
VPS39-208ENST00000564994 MCRIP1C9JLW8 97 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 FGF16O43320 207 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 SC5DO75845 299 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 GAPDHP04406 335 aaKnown RBP8.56□□□□□ -1.04
VPS39-208ENST00000564994 CDK1P06493 297 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 PF4V1P10720 104 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 IGLL1P15814 213 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 MGMTP16455 207 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 RCC1P18754 421 aaPredicted RBP8.56□□□□□ -1.04
VPS39-208ENST00000564994 ZNF134P52741 427 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 RNLSQ5VYX0 342 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 UNQ9370/PRO34162Q6UXP9 181 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 MOB3BQ86TA1 216 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 Q8N6K4 173 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 ZNF439Q8NDP4 499 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 OR1L1Q8NH94 360 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 RTN4IP1Q8WWV3 396 aaPredicted RBP8.56□□□□□ -1.04
VPS39-208ENST00000564994 FAM46BQ96A09 425 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 EAF1Q96JC9 268 aaPredicted RBP8.56□□□□□ -1.04
VPS39-208ENST00000564994 LINC00527Q9UJ94 153 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 TRAPPC2LQ9UL33 140 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 ERGIC3Q9Y282 383 aa8.56□□□□□ -1.04
VPS39-208ENST00000564994 LSM2Q9Y333 95 aaKnown RBP8.56□□□□□ -1.04
VPS39-208ENST00000564994 UBE2QL1A1L167 161 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 FAM90A10PA6NDY2 464 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 FAM90A7PA6NKC0 464 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 FAM90A23PA8MXZ1 464 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 PTGES3LE9PB15 166 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 CRTAPO75718 401 aaPredicted RBP8.55□□□□□ -1.04
VPS39-208ENST00000564994 IGHG2P01859 326 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 HBZP02008 142 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 CD33P20138 364 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 GABPB1Q06547 395 aaPredicted RBP8.55□□□□□ -1.04
VPS39-208ENST00000564994 ACSM3Q53FZ2 586 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 CT45A1Q5HYN5 189 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 KHDC1LQ5JSQ8 128 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 C6orf141Q5SZD1 244 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 FOXB2Q5VYV0 432 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 SLC25A48Q6ZT89 311 aaKnown RBP8.55□□□□□ -1.04
VPS39-208ENST00000564994 LRRTM1Q86UE6 522 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 IZUMO1Q8IYV9 350 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 PRR18Q8N4B5 295 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 NKAIN3Q8N8D7 197 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 OR10V1Q8NGI7 309 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 CT45A3Q8NHU0 189 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 NRG4Q8WWG1 115 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 UQCC2Q9BRT2 126 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 PLSCR3Q9NRY6 295 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 NECAP2Q9NVZ3 263 aa8.55□□□□□ -1.04
VPS39-208ENST00000564994 AURKAIP1Q9NWT8 199 aaPredicted RBP8.55□□□□□ -1.04
VPS39-208ENST00000564994 SERPINE3A8MV23 424 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 SPINT2O43291 252 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 PDCD6O75340 191 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 PF4P02776 101 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 GLAP06280 429 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 VSIG8P0DPA2 414 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 FUT3P21217 361 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 MAPK3P27361 379 aaPredicted RBP8.54□□□□□ -1.04
VPS39-208ENST00000564994 ZNF137PP52743 207 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 AQP4P55087 323 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 GPR50Q13585 617 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 IRF3Q14653 427 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 GNMTQ14749 295 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 SPHARQ15513 63 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 Q3ZCU0 254 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 C6orf183Q5T699 404 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 OR10K2Q6IF99 312 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 ETV3LQ6ZN32 361 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 C18orf65Q6ZTR6 163 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 REC114Q7Z4M0 266 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 Q8N9W7 124 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 OR2T10Q8NGZ9 312 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 MRPL30Q8TCC3 161 aaKnown RBP8.54□□□□□ -1.04
VPS39-208ENST00000564994 CHPT1Q8WUD6 406 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 THRSPQ92748 146 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 TMED9Q9BVK6 235 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 MND1Q9BWT6 205 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 KCNK15Q9H427 330 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 DCLRE1BQ9H816 532 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 TAF9BQ9HBM6 251 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 MBNL3Q9NUK0 354 aaKnown RBP8.54□□□□□ -1.04
VPS39-208ENST00000564994 GNG12Q9UBI6 72 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms