RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ADAP1O75689 374 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 TUSC2O75896 110 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 LHBP01229 141 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 CD80P33681 288 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 SERPINF1P36955 418 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 CCL8P80075 99 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 TLE1Q04724 770 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 FAM201AQ5SY85 155 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 SLC35E4Q6ICL7 350 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 ZNF565Q8N9K5 539 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 COQ2Q96H96 371 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 NAA60Q9H7X0 242 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 TAF9BQ9HBM6 251 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 OR1A1Q9P1Q5 309 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 RNF7Q9UBF6 113 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 IGKV1D-13A0A0B4J2D9 117 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 E7EQL1 145 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 TSC22D2O75157 780 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 IGKV1-13P0DP09 117 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 KCNJ3P48549 501 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 SRSF4Q08170 494 aaKnown RBP11.23□□□□□ -0.61
HMGB1-202ENST00000339872 LGALSLQ3ZCW2 172 aaPredicted RBP11.23□□□□□ -0.61
HMGB1-202ENST00000339872 KRBOX4Q5JUW0 171 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 GSG1LQ6UXU4 331 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 ZCCHC24Q8N2G6 241 aaKnown RBP11.23□□□□□ -0.61
HMGB1-202ENST00000339872 CCDC71LQ8N9Z2 235 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 DIRC2Q96SL1 478 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 PPP1R3CQ9UQK1 317 aa11.23□□□□□ -0.61
HMGB1-202ENST00000339872 DYSFO75923 2080 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 RAI1Q7Z5J4 1906 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-202ENST00000339872 NBASA2RRP1 2371 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 FXYD6-FXYD2A0A087WZ82 144 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 CYB5R3P00387 301 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-202ENST00000339872 CD8AP01732 235 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 SSTR2P30874 369 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 HMGN3Q15651 99 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 LRRC37A5PQ49AS3 106 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 H1FOOQ8IZA3 346 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-202ENST00000339872 TPRX1Q8N7U7 411 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 SLC5A7Q9GZV3 580 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 SHARPINQ9H0F6 387 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 SLA2Q9H6Q3 261 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 METTL8Q9H825 291 aaKnown RBP11.22□□□□□ -0.61
HMGB1-202ENST00000339872 RAB18Q9NP72 206 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 KCNIP1Q9NZI2 227 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 COMMD9Q9P000 198 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 KCNIP3Q9Y2W7 256 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 DIDO1Q9BTC0 2240 aaKnown RBP11.22□□□□□ -0.61
HMGB1-202ENST00000339872 KIAA2026Q5HYC2 2103 aa11.22□□□□□ -0.61
HMGB1-202ENST00000339872 TUBAL3A6NHL2 446 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 HSPA12AO43301 675 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 ADH4P08319 380 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 OR5AC1P0C628 307 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 GNRHRP30968 328 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 EDDM3AQ14507 147 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 SP6Q3SY56 376 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 ERGIC1Q969X5 290 aa11.21□□□□□ -0.61
HMGB1-202ENST00000339872 TRAV14DV4A0A0A6YYC5 116 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 NPIPB11E5RHQ5 1161 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 RGS13O14921 159 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF737O75373 536 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 PLAUP00749 431 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 HOXB5P09067 269 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 IRF2P14316 349 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 TNFRSF1AP19438 455 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 GLIPR1P48060 266 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF818PQ6ZRF7 136 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 TGIF2LYQ8IUE0 185 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 PPP1R1CQ8WVI7 109 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 GALNT14Q96FL9 552 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 GON7Q9BXV9 100 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 DNTTIP1Q9H147 329 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 OR2W1Q9Y3N9 320 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 RNF115Q9Y4L5 304 aa11.21□□□□□ -0.62
HMGB1-202ENST00000339872 TPRP12270 2363 aaKnown RBP11.2□□□□□ -0.62
HMGB1-202ENST00000339872 OOEPA6NGQ2 149 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 MPTX1A8MV57 137 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 HSD17B6O14756 317 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 ARPC5O15511 151 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 CD55P08174 381 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 FGL1Q08830 312 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 TESK1Q15569 626 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 BEX5Q5H9J7 111 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 Q8TCH9 128 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 MRGPRDQ8TDS7 321 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 SAP30LQ9HAJ7 183 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 DYNLRB1Q9NP97 96 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 CCL28Q9NRJ3 127 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 RDH8Q9NYR8 311 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 C12orf77C9JDV5 145 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 GPR31O00270 319 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 SIAH2O43255 324 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 APOBEC3AP31941 199 aaPredicted RBP11.2□□□□□ -0.62
HMGB1-202ENST00000339872 UQCRFS1P47985 274 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 FAM185AQ8N0U4 392 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 ZNRF1Q8ND25 227 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 OR1L1Q8NH94 360 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 ANGPTL6Q8NI99 470 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 PPP1R35Q8TAP8 253 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 SUCNR1Q9BXA5 334 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms