RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 THNSL2Q86YJ6 484 aa15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 OR13A1Q8NGR1 328 aa15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 GHSRQ92847 366 aa15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 RPEQ96AT9 228 aa15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 SLC25A33Q9BSK2 321 aa15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 DPCDQ9BVM2 203 aaPredicted RBP15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 IDI2-AS1Q9NZ38 188 aa15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 SIRT4Q9Y6E7 314 aaPredicted RBP15.26■□□□□ 0.03
CCDC28A-203ENST00000617445 TRBV5-5A0A0J9YX44 114 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM172BPA6NC97 362 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 EFCAB10A6NFE3 127 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 J3QR06 171 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM106CPP0CH98 169 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 IGFBP3P17936 291 aaPredicted RBP15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 OR3A4PP47883 348 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 RBM11P57052 281 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 RBM39Q14498 530 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 MPV17LQ2QL34 196 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 NSUN5P1Q3KNT7 163 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 Q499Y3 187 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 Q6ZS46 218 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 SUMF2Q8NBJ7 301 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 OR10K1Q8NGX5 313 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 OR5M11Q96RB7 305 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 CNOT2Q9NZN8 540 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 CLEC2DQ9UHP7 191 aa15.25■□□□□ 0.03
CCDC28A-203ENST00000617445 OR7C1O76099 320 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 CDRT1O95170 752 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 ST3GAL4Q11206 333 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 KPRPQ5T749 579 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 CENPVQ7Z7K6 275 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 C1QL4Q86Z23 238 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 CDH26Q8IXH8 852 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 ZNF485Q8NCK3 441 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 OR5AU1Q8NGC0 362 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 GGHQ92820 318 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 R3HDM4Q96D70 268 aa15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 CITED2Q99967 270 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-203ENST00000617445 GTF2F2P13984 249 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 FSTP19883 344 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 CD24P25063 80 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 RAB7AP51149 207 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 CD83Q01151 205 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 MADCAM1Q13477 382 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 RCN1Q15293 331 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 SAMD5Q5TGI4 173 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 C8orf59Q8N0T1 100 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 PLPPR1Q8TBJ4 325 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 MRGPRDQ8TDS7 321 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 TOMM40LQ969M1 308 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 MRPS24Q96EL2 167 aaKnown RBP15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 ZNF184Q99676 751 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 SPACA1Q9HBV2 294 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 PSG11Q9UQ72 335 aa15.23■□□□□ 0.03
CCDC28A-203ENST00000617445 TMEM30CPA0ZSE6 113 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A18PA6NE21 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A16PA6NEW6 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A20PA6NIJ5 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A9PA6NNJ1 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A12PA8MX19 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A5PA8MXJ8 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 LALBAP00709 142 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 CD1AP06126 327 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A15PP0C7V4 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A13PP0C7W8 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A14PP0C7W9 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 FAM90A24PP0C7X0 464 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 SERPINA2P20848 420 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 CAPGP40121 348 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 RPS11P62280 158 aaKnown RBP eCLIP15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 GABPB1Q06547 395 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 BEAN1Q3B7T3 259 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 ABCA11PQ4W5N1 156 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 OR8H3Q8N146 312 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 LYG1Q8N1E2 194 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 OR52M1Q8NGK5 317 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 THRSPQ92748 146 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 PGLYRP3Q96LB9 341 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 PLCXD1Q9NUJ7 323 aa15.22■□□□□ 0.03
CCDC28A-203ENST00000617445 ADARB2-AS1A8MUL3 147 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 G3V4G9 280 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 GEMIN2O14893 280 aaKnown RBP15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 TMEM95Q3KNT9 176 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 HIST2H2BDQ6DRA6 164 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 REC114Q7Z4M0 266 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 RFESDQ8TAC1 157 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 RAB9BQ9NP90 201 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 MOB4Q9Y3A3 225 aa15.21■□□□□ 0.03
CCDC28A-203ENST00000617445 TRBV5-7A0A0A0MS05 114 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 ORC5O43913 435 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 AMY1AP04745 511 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 AMY2AP04746 511 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 LPLP06858 475 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 SLC22A6Q4U2R8 563 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 UTF1Q5T230 341 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 ATAD3CQ5T2N8 411 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 STX19Q8N4C7 294 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 C8orf31Q8N9H6 132 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 OR4X2Q8NGF9 303 aa15.2■□□□□ 0.02
CCDC28A-203ENST00000617445 OR13C5Q8NGS8 318 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms