RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 EXOGQ9Y2C4 368 aaKnown RBP13.64□□□□□ -0.23
PTPRF-201ENST00000359947 ADRB1P08588 477 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 LIAT1Q6ZQX7 453 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 GAPTQ8N292 157 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 CLDN14O95500 239 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 RPL7P18124 248 aaKnown RBP13.64□□□□□ -0.23
PTPRF-201ENST00000359947 PCMT1P22061 227 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 STARD10Q9Y365 291 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 YTHDF2Q9Y5A9 579 aaKnown RBP13.64□□□□□ -0.23
PTPRF-201ENST00000359947 LRP5O75197 1615 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 SFT2D2O95562 160 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 CSN3P07498 182 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 ARAP2Q8WZ64 1704 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 DUSP18Q8NEJ0 188 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 KIAA1324LA8MWY0 1029 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-201ENST00000359947 DHRS2Q13268 280 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 CDCP2Q5VXM1 449 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 NHLH1Q02575 133 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 NHLH2Q02577 135 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 COMMD1Q8N668 190 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 RHOFQ9HBH0 211 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 BMPR1BO00238 502 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 CCL28Q9NRJ3 127 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 A0A0J9YW62 118 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 NQO2P16083 231 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 FAM219AQ8IW50 185 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 OR1K1Q8NGR3 316 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 ATP5SQ99766 215 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 SPTBP11277 2137 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 GP1BAP07359 652 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 OR5AL1P0C617 328 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 GZMHP20718 246 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 PPP1CCP36873 323 aaKnown RBP13.63□□□□□ -0.23
PTPRF-201ENST00000359947 LINC01560Q8TB33 94 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 ZNF764Q96H86 408 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-201ENST00000359947 SLC52A3Q9NQ40 469 aa13.63□□□□□ -0.23
PTPRF-201ENST00000359947 FAM87AP0C7U9 286 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 FAM214BQ7L5A3 538 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 ATAD5Q96QE3 1844 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 PIKFYVEQ9Y2I7 2098 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 MAP1LC3B2A6NCE7 125 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 PRDX2P32119 198 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 C21orf58P58505 322 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 STARD6P59095 220 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 ZNF658BQ4V348 819 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-201ENST00000359947 GLDNQ6ZMI3 551 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-201ENST00000359947 MUC20Q8N307 709 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-201ENST00000359947 ZDHHC22Q8N966 263 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 MAP1LC3BQ9GZQ8 125 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 WNT5AP41221 380 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 CRYBB2P43320 205 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 GALR1P47211 349 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 CES1P1Q9UKY3 287 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 UCP2P55851 309 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 OR4P4Q8NGL7 312 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 OR4X1Q8NH49 305 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 OR1L1Q8NH94 360 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 STARD4Q96DR4 205 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 DIRC2Q96SL1 478 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 TMSB15BA0A087X1C1 80 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 CD1BP29016 333 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 PERPQ96FX8 193 aa13.62□□□□□ -0.23
PTPRF-201ENST00000359947 SFTA3P0C7M3 94 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 HOXC8P31273 242 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 PSG5Q15238 335 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 MRM1Q6IN84 353 aaKnown RBP13.61□□□□□ -0.23
PTPRF-201ENST00000359947 ZNF596Q8TC21 504 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 SAP25Q8TEE9 199 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 TMEM37Q8WXS4 190 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 MRGPRFQ96AM1 343 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 RHBDL1O75783 438 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 ZNF714Q96N38 554 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 J3QR89 54 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 PTBP3O95758 552 aaKnown RBP13.61□□□□□ -0.23
PTPRF-201ENST00000359947 CYB5R3P00387 301 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-201ENST00000359947 PLPPR5Q32ZL2 321 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 PIPOXQ9P0Z9 390 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 SF3B6Q9Y3B4 125 aaKnown RBP13.61□□□□□ -0.23
PTPRF-201ENST00000359947 WIPI2Q9Y4P8 454 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 RRN3P1Q2M238 152 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 SRD5A3Q9H8P0 318 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 SLC17A5Q9NRA2 495 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 FOXJ2Q9P0K8 574 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 ABCA3Q99758 1704 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 GFRA1P56159 465 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 TCL1AP56279 114 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 FAM78BQ5VT40 261 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 GUCD1Q96NT3 240 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 RNF122Q9H9V4 155 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 FOCADQ5VW36 1801 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 FAM162BQ5T6X4 162 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 DOLPP1Q86YN1 238 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 DDA1Q9BW61 102 aa13.61□□□□□ -0.23
PTPRF-201ENST00000359947 ERVFRD-1P60508 538 aa13.6□□□□□ -0.23
PTPRF-201ENST00000359947 ITLN1Q8WWA0 313 aa13.6□□□□□ -0.23
PTPRF-201ENST00000359947 CA10Q9NS85 328 aa13.6□□□□□ -0.23
PTPRF-201ENST00000359947 IL17BQ9UHF5 180 aa13.6□□□□□ -0.23
PTPRF-201ENST00000359947 ADAP1O75689 374 aa13.6□□□□□ -0.23
PTPRF-201ENST00000359947 ROM1Q03395 351 aa13.6□□□□□ -0.23
PTPRF-201ENST00000359947 SLC35E4Q6ICL7 350 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms