RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RHBDD1Q8TEB9 315 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 FAM222BQ8WU58 562 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 SPACA9Q96E40 222 aaPredicted RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 ABCA7Q8IZY2 2146 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 TRAV34A0A0B4J273 112 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 TNRC18O15417 2968 aaPredicted RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 LILRA1O75019 489 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ZNF43P17038 809 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 GABRA2P47869 451 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ELOA3BQ3SY89 546 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 GPR157Q5UAW9 335 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 FAM180AQ6UWF9 173 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ABHD12BQ7Z5M8 362 aaPredicted RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 ZNF595Q8IYB9 648 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ELOA3Q8NG57 546 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 OR52E2Q8NGJ4 325 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 OR2G3Q8NGZ4 309 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 TM4SF19Q96DZ7 209 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ZNF479Q96JC4 524 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 TUBD1Q9UJT1 453 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 PILRAQ9UKJ1 303 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ZNF443Q9Y2A4 671 aaPredicted RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 LOC102723971A0A1B0GUV8 181 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 TYMSP04818 313 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 MYF5P13349 255 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 ZNF684Q5T5D7 378 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 LCN10Q6JVE6 187 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 SLC16A9Q7RTY1 509 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 C1orf174Q8IYL3 243 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 ZNF676Q8N7Q3 588 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 OR52R1Q8NGF1 315 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 SDF2Q99470 211 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 PRSS27Q9BQR3 290 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 HSPB9Q9BQS6 159 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 ZNF586Q9NXT0 402 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 ENTPD2Q9Y5L3 495 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 TRAV27A0A087WT01 109 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 A0A1B0GUS0 222 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 FAM166BA8MTA8 275 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 PRR32B1ATL7 298 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 RBFOX2O43251 390 aaKnown RBP eCLIP8.9□□□□□ -0.98
VPS39-214ENST00000614932 PPIAL4GP0DN37 164 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 GNB3P16520 340 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 TAS2R30P59541 319 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 BSXQ3C1V8 233 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 COX15Q7KZN9 410 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 OR10AC1Q8NH08 325 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 BAHD1Q8TBE0 780 aaPredicted RBP8.9□□□□□ -0.98
VPS39-214ENST00000614932 NT5CQ8TCD5 201 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 SLC46A1Q96NT5 459 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 SCGB3A2Q96PL1 93 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 ADOQ96SZ5 270 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 LPAR5Q9H1C0 372 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 G6PC2Q9NQR9 355 aa8.9□□□□□ -0.98
VPS39-214ENST00000614932 TRAV26-1A0A087WT03 109 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 FIGNL2A6NMB9 653 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 CEACAM18A8MTB9 384 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 MSTNO14793 375 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 RAMP3O60896 148 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 UPK3AO75631 287 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 HRASP01112 189 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 HBE1P02100 147 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 TSPOP30536 169 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 DCST2Q5T1A1 773 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 MRPL2Q5T653 305 aaKnown RBP8.9□□□□□ -0.99
VPS39-214ENST00000614932 FAM71F2Q6NXP2 309 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 TMEM144Q7Z5S9 345 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 ADGRE4PQ86SQ3 457 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 C20orf196Q8IYI0 205 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 RCBTB1Q8NDN9 531 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 NUDT9Q9BW91 350 aa8.9□□□□□ -0.99
VPS39-214ENST00000614932 SPTY2D1-AS1A0A0U1RR47 76 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 IGLC7A0M8Q6 106 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 HSPB2A8KAH6 182 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 ZNF891A8MT65 544 aaPredicted RBP8.89□□□□□ -0.99
VPS39-214ENST00000614932 H3BSH0 61 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 H7BYZ3 331 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 SERPINA7P05543 415 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 SMIM10L1P0DMW3 83 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 PI3P19957 117 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 GRPRP30550 384 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 CSNK1A1P48729 337 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 DUSP3P51452 185 aaPredicted RBP8.89□□□□□ -0.99
VPS39-214ENST00000614932 SHBQ15464 509 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 HSPB2Q16082 182 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 CA13Q8N1Q1 262 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 KLHDC1Q8N7A1 406 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 OR51A4Q8NGJ6 313 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 OR2T10Q8NGZ9 312 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 OR4K13Q8NH42 304 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 FNDC9Q8TBE3 224 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 STARD4Q96DR4 205 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 ZNF764Q96H86 408 aaPredicted RBP8.89□□□□□ -0.99
VPS39-214ENST00000614932 SMIM10Q96HG1 83 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 LRRC61Q9BV99 259 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 FBRSQ9HAH7 460 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 MANBALQ9NQG1 85 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 MRM2Q9UI43 246 aaKnown RBP8.89□□□□□ -0.99
VPS39-214ENST00000614932 A0A0J9YY10 115 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 A0A1W2PNV4 684 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms