RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF662Q6ZS27 426 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 IRF2BP2Q7Z5L9 587 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 TMEM86BQ8N661 226 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 OR8G5Q8NG78 346 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 CCL13Q99616 98 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 NRIP3Q9NQ35 241 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 MARCH4Q9P2E8 410 aaPredicted RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 PSG11Q9UQ72 335 aa3.55□□□□□ -1.84
USH2A-202ENST00000366942 TBL2Q9Y4P3 447 aaKnown RBP3.55□□□□□ -1.84
USH2A-202ENST00000366942 ZNF462Q96JM2 2506 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 RP2O75695 350 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CTRB1P17538 263 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 GABRB1P18505 474 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ATF1P18846 271 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 LEPP41159 167 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 HNRNPA3P51991 378 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 ZNF266Q14584 549 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TMEM187Q14656 261 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ZNF74Q16587 644 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CTRB2Q6GPI1 263 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 MBOAT2Q6ZWT7 520 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ANGPTL5Q86XS5 388 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR10V1Q8NGI7 309 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR4C16Q8NGL9 310 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR52N1Q8NH53 320 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ZFAND2BQ8WV99 257 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 RAB6CQ9H0N0 254 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CD320Q9NPF0 282 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SLC45A2Q9UMX9 530 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 MAB21L2Q9Y586 359 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SOX21Q9Y651 276 aaPredicted RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 TNRC6CQ9HCJ0 1690 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 TMEM189A5PLL7 270 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 NPFFO15130 113 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PRB1P04280 392 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TPT1P13693 172 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 IGFBP2P18065 325 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CD80P33681 288 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 GPM6AP51674 278 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SELENOTP62341 195 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR10J3Q5JRS4 329 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 LCNL1Q6ZST4 164 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR7G2Q8NG99 324 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR4Q3Q8NH05 313 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR5B3Q8NH48 314 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 KIR2DL5BQ8NHK3 375 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 EGLN2Q96KS0 407 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 YTHDF1Q9BYJ9 559 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 GLIPR2Q9H4G4 154 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 MAGIXQ9H6Y5 334 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PHRF1Q9P1Y6 1649 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 SLC25A20O43772 301 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CEACAM4O75871 244 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 HAND1O96004 215 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 IGLV3-27P01718 113 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR9G9P0C7N8 305 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 GLI4P10075 376 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CPN1P15169 458 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 HILS1P60008 231 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 FGF12P61328 243 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CIRBPQ14011 172 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 TMEM155Q4W5P6 130 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PRR31Q5SQ13 230 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 RPL7L1Q6DKI1 246 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 IDO2Q6ZQW0 420 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 GAPTQ8N292 157 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR10K1Q8NGX5 313 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR51H1Q8NH63 302 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 MRPL30Q8TCC3 161 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 RXFP4Q8TDU9 374 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TM4SF18Q96CE8 201 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 MTCH1Q9NZJ7 389 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SIGLEC7Q9Y286 467 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 MRPS18CQ9Y3D5 142 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 FLVCR1Q9Y5Y0 555 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 V9GY05 133 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 AURKAO14965 403 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 AGPAT2O15120 278 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PPP1R17O96001 155 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 NHLRC4P0CG21 123 aaPredicted RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 TRAPPC2P0DI81 140 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TRAPPC2BP0DI82 140 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TDGF1P13385 188 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CD34P28906 385 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ATP5IP56385 69 aaPredicted RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 RPS25P62851 125 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 ZFP36L1Q07352 338 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 TNK1Q13470 666 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CDCP2Q5VXM1 449 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 CBLL1Q75N03 491 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR2L13Q8N349 312 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ZNF561Q8N587 486 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PQLC3Q8N755 202 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 ADPRHL1Q8NDY3 354 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 DYRK2Q92630 601 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SDF2Q99470 211 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 HRH4Q9H3N8 390 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 LSM5Q9Y4Y9 91 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 A0A1W2PS29 197 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TM4SF5O14894 197 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms