RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C17orf58Q2M2W7 97 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 PAN3Q58A45 887 aaKnown RBP14.82□□□□□ -0.04
CLN3-202ENST00000355477 MINOS1Q5TGZ0 78 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 TREML4Q6UXN2 200 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 ABHD12Q8N2K0 398 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 STX19Q8N4C7 294 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 OR14A2Q96R54 314 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 MINOS1-NBL1R4GNA1 71 aa14.82□□□□□ -0.04
CLN3-202ENST00000355477 TET2Q6N021 2002 aaPredicted RBP14.82□□□□□ -0.04
CLN3-202ENST00000355477 TRBV5-7A0A0A0MS05 114 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 A6NDX4 124 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 CGB3P0DN86 165 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 CGB7P0DN87 165 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 WNT4P56705 351 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 IL13RA2Q14627 380 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 OR52W1Q6IF63 320 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 LIAT1Q6ZQX7 453 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 TMEM219Q86XT9 240 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 NANOGP1Q8N7R0 232 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 OR4P4Q8NGL7 312 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 NDNFQ8TB73 568 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 PLPPR1Q8TBJ4 325 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 ZNF184Q99676 751 aaPredicted RBP14.81□□□□□ -0.04
CLN3-202ENST00000355477 METTL9Q9H1A3 318 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 VCXQ9H320 206 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 ZNF286AQ9HBT8 521 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 TCF7L1Q9HCS4 588 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 RAB18Q9NP72 206 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 IL36GQ9NZH8 169 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 KIF25Q9UIL4 384 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 TCF19Q9Y242 345 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 ST3GAL6Q9Y274 331 aa14.81□□□□□ -0.04
CLN3-202ENST00000355477 MYL12BO14950 172 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 CELP19835 753 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 HTR1DP28221 377 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 DYNLT3P51808 116 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 EFNB2P52799 333 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 AQP4P55087 323 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 TAS2R43P59537 309 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 OSR2Q8N2R0 312 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 OR4C13Q8NGP0 309 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 OR13A1Q8NGR1 328 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 ABCB10Q9NRK6 738 aa14.8□□□□□ -0.04
CLN3-202ENST00000355477 MEIKINA0A087WXM9 373 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 A0A1W2PP11 408 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 ZNF729A6NN14 1252 aaPredicted RBP14.79□□□□□ -0.04
CLN3-202ENST00000355477 PTGES3LE9PB15 166 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 GEMIN2O14893 280 aaKnown RBP14.79□□□□□ -0.04
CLN3-202ENST00000355477 PIN1P1O15428 100 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 IGLV1-47P01700 117 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 CDK1P06493 297 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 SERPINA2P20848 420 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 CD34P28906 385 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 RBM11P57052 281 aaKnown RBP14.79□□□□□ -0.04
CLN3-202ENST00000355477 BDH1Q02338 343 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 NHLRC3Q5JS37 347 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 C6orf141Q5SZD1 244 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 RSBN1Q5VWQ0 802 aaPredicted RBP14.79□□□□□ -0.04
CLN3-202ENST00000355477 RTN4RL2Q86UN3 420 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 SUMF2Q8NBJ7 301 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 OR4D6Q8NGJ1 314 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 SGCDQ92629 289 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 DERL3Q96Q80 235 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 DPCDQ9BVM2 203 aaPredicted RBP14.79□□□□□ -0.04
CLN3-202ENST00000355477 CDCA4Q9BXL8 241 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 BARHL1Q9BZE3 327 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 RANBP3Q9H6Z4 567 aaPredicted RBP14.79□□□□□ -0.04
CLN3-202ENST00000355477 OR6C3Q9NZP0 311 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 CKLFQ9UBR5 152 aa14.79□□□□□ -0.04
CLN3-202ENST00000355477 KBTBD11-OT1A0A1B0GTJ5 212 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 CSTBP04080 98 aaKnown RBP14.78□□□□□ -0.04
CLN3-202ENST00000355477 CD1AP06126 327 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 FSTP19883 344 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 SLC22A6Q4U2R8 563 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 HIST2H2BDQ6DRA6 164 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 ZNF565Q8N9K5 539 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 S100A13Q99584 98 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 NPFFR1Q9GZQ6 430 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 NCOR1P1Q9H4R4 102 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 IFT22Q9H7X7 185 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 ZNF702PQ9H963 129 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 DPM3Q9P2X0 92 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 FOXJ3Q9UPW0 622 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 ERGIC3Q9Y282 383 aa14.78□□□□□ -0.04
CLN3-202ENST00000355477 A0A087X0M5 115 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 TRAV39A0A0B4J263 110 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 A0A1B0GX30 115 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 FAM90A22PA8MWA6 464 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 TIMM23O14925 209 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 OR7C1O76099 320 aaPredicted RBP14.77□□□□□ -0.05
CLN3-202ENST00000355477 NFYBP25208 207 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 GLP1RP43220 463 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 PAX5Q02548 391 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 HABP2Q14520 560 aaPredicted RBP14.77□□□□□ -0.05
CLN3-202ENST00000355477 INSL4Q14641 139 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 RNLSQ5VYX0 342 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 OR2T6Q8NHC8 308 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 MUL1Q969V5 352 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 KIRREL1Q96J84 757 aa14.77□□□□□ -0.05
CLN3-202ENST00000355477 LINC00574Q9H8X3 128 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms